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GT13402

CSHL Arabidopsis genetrap mutant lines

Original: GT13402

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13402

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2945909 [Map]; Strand: w
      • AT3G09595.1 - [+] show detail - pre-tRNA
        Distance: -132; Region: promoter
      • AT3G09600.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -497; Region: promoter
      • AT3G09600.2 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -497; Region: promoter
    Flanking Genome Sequence: GT13402 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACCACTG GGTGCTTGCC 
    GCCCATGTCG TTATGTGAAA CATCCAACAC TTTAGCTGCT TCAGATGTCT 
    TAGAGAGTCA AGGGATGAAA AGCTCCGATT TAGGCAACAG AGAATTCGGT 
    TTTGTATTCA AATCTTACGA AACAAATACA ACAAGTCGAT ATGTCCGAGT 
    GGTTAAGGAG ATAGACTTGA AATCTATTGG GCTTCGCCCG CGCAGGTTCG 
    AACCCTGCTG TCGACGTTTT TTTTTATTAT TGATCTTTAA TATAGTAAAA 
    TTAAAAGATT CCGAACCATT TGAATTTATA CCTCTTCAAT ACATGGCTGT 
    ATATATGTAA GGACCAAGAA TAATATACCA TCTTCATTAC TTTAGAAGAA 
    GAAAAAATAT TTTGAATCTC TAACAATTTT TTCATTTTAA CTGTTTTGAT 
    CAAAATGGTC TTTCACCTTC GTAATTCCCG CGTGGATCAT ATTCACACAC 
    CACAAGATAG CCACGACCGT TATTGCATTT CACACGTGCG CATCCAACGG 
    CTGTGGTCTC TCTCCACACC ATCTGCGTGT AATGGCCGCA CATCTTTCCC 
    GGTGCGCACG TGTTTGTTTT CACGTCGTAG TTAAACCTTT CCTCAAACCA 
    TCTCGTCACC ACTTTCTCCG GCGACCACGT CTTCTTACGC CGGTGCCAGA 
    AAATGTTCTC ACCGTAAGGC CCACCTGAAT GTATCATACT GCAATCGGAC 
    TTACGTTGTT TAGCCCATT

AT3G09595.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Ser (anticodon: TGA)
Link
InterPro Scan - TAIR

AT3G09600.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LHY/CCA1-like 1 (TAIR:AT5G02840.3); Has 1480 Blast hits to 1470 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 6; Plants - 1120; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09600.2

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LHY/CCA1-like 1 (TAIR:AT5G02840.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR