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GT13421

CSHL Arabidopsis genetrap mutant lines

Original: GT13421

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13421

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18423080 [Map]; Strand: c
      • AT5G45470.1 - [+] show detail - Protein of unknown function (DUF594)
        Distance: 0; Region: exon1 (CDS)
      • AT5G45472.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT13421 - 3-prime edge 
    AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT ATGCGGGATA 
    GGAACTCAAA ATAGAGAGGG TAAATGGTAC GACGAGCCAA AGGATAAATT 
    CTTGATAACC CATCGACTTT GTGGCTGATC CACCTGTGCA CAAAATTGAT 
    CAACTTGACA ATATATCCAA ATACTCTCTG GACGATGAAG ATAAGTTTTT 
    CGAATGGGAA AGATATGATC TTCCATGAGT ACCGGCGGAC ACTACCTCTT 
    GCGTCGTGAA TCCTCTTTAC ATCTGCTTTT GTGGCGTAAG CTAAAAAGTT 
    GAATACGTTG ATGCTTCCGC ACCACCTCCG GAGGAAAACC CGTGTCGTGA 
    GCACGTCATG CTTCT

AT5G45470.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF594)
Computational Description
Protein of unknown function (DUF594); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF594 (InterPro:IPR007658); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45460.1); Has 1360 Blast hits to 854 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1360; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G45472.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G45470
Link
InterPro Scan - TAIR