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GT13438

CSHL Arabidopsis genetrap mutant lines

Original: GT13438

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13438

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT13438 - 3-prime edge 
    ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    ACAGCCTGGT ATCAAACTGA AAAGGTCTGA TACCTTGTTC TGTTTTCCTC 
    CGAATTTTGA TGATAGCAGG TCGATGGTCC GATTCCACCA TTTCTAAGTA 
    AATCACCTCT GACGCTGGAA AAGTAGCTTT CCACTGGTCA GCTGTCATTG 
    CTCTATTAAG CCAACTCTCT ACTGTATAAT TTCTCCTTTT TCCCACCCAA 
    GTCATGTTGT TACCTTGGAA AGGAAGGTCA GAAATCTTAC AACACTTAAC 
    CATGTTTCTA AAGTCAGCCA AACTCCAATT TTCTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 16470207 [Map]; Strand: w
      • AT1G43670.1 - [+] show detail - Inositol monophosphatase family protein
        Distance: 0; Region: intron11 (CDS)
      • AT1G43675.1 - [+] show detail - transposable element gene
        Distance: -665; Region: promoter
    Flanking Genome Sequence: GT13438 - 5-prime edge 
    TCCTACTTTC TCCCTGCAGG CTGTGTTCAA ATCTGGAATT GGAAGGAGTG 
    ATTAAACAGA TTTGGAATAA CAATCTCGTT TATGGCAACA CTTCTCTCCA 
    AGAGTGCATA CGCAATTGCA GAAGAGAAAT ATTACTCTTG GAAAAGGAAT 
    CATAACACAA ATTCTGCAAT CCGGATCAAA GATATAATAA AAGAGATTGA 
    CGTTGCACAT TCAGACAACT CAAATTCCGT GGAGCAGATT CGTCACCTAC 
    GACGAGAATT GATTAAAGCC TATCGTGAGG AGGAAACGTT TTGGAAATTA 
    AAAAGCAGGA ATCAATGGTT AAATGAAGGT GATCGTAACA CTCGATTTTT 
    TCATGCTTCA ACGAAAAATC GAATTGTTAG GAATCGTTTA AACTCCATTC 
    AAGACATAAA TGGGATGACA GTTTATGGAA ACAATGACAT AGGCTCAGAA 
    GTAGTGCGTT ATTTCAGTGA CTTATTTTCT GAATCTGTAG AGTGCCCTAA 
    GGAATATACA TCCAGTAGTG ACCCATGAGA TGAATGAAGG GTTATTAAAG 
    GAGATCACAG TGGAGGAAAT ACGTGAAGCT CTCTTCTCCA TAGAAGCAAC 
    ACGAGCACCA GGACCGGATG GTTTTAACGC AGTTTTTTCC AACGCTATTG 
    GGAGATAGTG GGAGAAACGC TAGTCTCGGA GGTCAAACAT TTTTTTGCAA 
    CTTCAGAAAT GCAAAAAGGG GTGGAACCAT ACAAATCTCT ATCTGATCCC 
    TAAGATTGGG GAACCAAAAA CTATGAAAGA TTTCCGCCCA ATTA

AT1G43670.1

Model type
Protein coding
Short Description
Inositol monophosphatase family protein
Computational Description
Inositol monophosphatase family protein; FUNCTIONS IN: fructose 1,6-bisphosphate 1-phosphatase activity, phosphoric ester hydrolase activity; INVOLVED IN: carbohydrate metabolic process, fructose metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Fructose-1,6-bisphosphatase, active site (InterPro:IPR020548), Fructose-1,6-bisphosphatase (InterPro:IPR000146); BEST Arabidopsis thaliana protein match is: high cyclic electron flow 1 (TAIR:AT3G54050.2); Has 3746 Blast hits to 3738 proteins in 1274 species: Archae - 47; Bacteria - 2330; Metazoa - 401; Fungi - 156; Plants - 330; Viruses - 0; Other Eukaryotes - 482 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G43675.1

Model type
Transposable element gene
Short Description
transposable element gene
Curator Summary
similarity to non-LTR retroelement protein
Computational Description
expressed protein
Link
InterPro Scan - TAIR