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Mutant Lines
GT13440

GT13440

CSHL Arabidopsis genetrap mutant lines

Original: GT13440

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13440

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 2; Position: 19623094 [Map]; Strand: w
- AT2G47940.1 - [+] show detail - DEGP protease 2
  Distance: -862; Region: promoter
- AT2G47940.2 - [+] show detail - DEGP protease 2
  Distance: -843; Region: promoter

TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATATACA TAGATATCTA 
AAATATCATC CATATCTATA GCGTTAGACT AACTAGTGTT GCATATTTAT 
ATAATTCTGC TGCAAAGAAA AAAAGAACCA CGTAAGTAAA TAAATGGTCA 
TGTAATTTTG GTGCTAGGGA GACAAAATAC GGAAATGGCG GTCGCTTTCG 
TTTAGAAATA AAGGGAATAT GGATGGGGCA ACGCGTGGAT TAAACCAGAA 
ACCTTTGATT TTATTTGTTG ACTTTGGGGA TGCCGCCTAC TTCTTTAATC 
AAAGTTAATG ATTAATTAAA TTTGATATTT ATCTTTTGTC ACACAAGCAA 
TTAACCAGTT TACTTATCTC GTTACGCAAT TAAACATGAT CATTCAAAAT 
GAAGCACCTA ACGAGTAGAC CCACATGAAC AAGTTGCCTA GGTTATATTT 
TTAAGAAAAG TAGTCATACA GTAGTATAAT TTTACATTAA ATCACGCTTT 
GATTAAAAGA ATTAAATAAC GGGATATAAT CATTTATCCA AAGAAACACA 
AAGAGAGAGA GATATAAGTA ATCATTAAGG TTTTTGGAAC GAGAACGATC 
ATAAGTGCAG ATACAAAAAG GATTACTTAT CAGTTATCAT ACCTAATTTG 
TTTATACGTG AAAAAGATTT CTAAAATGTA TATTCAACCT TGTCTAAAAA 
TATTTGAAAG TAATAGATAA TATTGTTGAA CTGTAGTTTA TAAGAAAGCC 
ATATACGTAT GTTTGTGGTT TGTGGAAACT GGAAAGCATA TGATATTCAT 
T

AT2G47940.1

Model type: Protein coding
Short Description: DEGP protease 2
Curator Summary: Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.
Computational Description: DEGP protease 2 (DEGP2); FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis; LOCATED IN: chloroplast stromal thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 9 (TAIR:AT5G40200.1); Has 15046 Blast hits to 15035 proteins in 2533 species: Archae - 101; Bacteria - 10614; Metazoa - 317; Fungi - 14; Plants - 376; Viruses - 0; Other Eukaryotes - 3624 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G47940.2

Model type: Protein coding
Short Description: DEGP protease 2
Curator Summary: Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.
Computational Description: DEGP protease 2 (DEGP2); FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis; LOCATED IN: chloroplast stromal thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 9 (TAIR:AT5G40200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR