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GT13443

CSHL Arabidopsis genetrap mutant lines

Original: GT13443

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13443

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 613637 [Map]; Strand: w
      • AT1G02800.1 - [+] show detail - cellulase 2
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: GT13443 - 3-prime edge
    GTAGAGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TAGAAATATC 
    CACGTCGGAT TCACCACCGT GGCTCATCTC TCCCCTCCGT TGCAGTCGCA
    CCCGACCGGA TCGTATCGGT TCATCTCTCT CGACT
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 613760 [Map]; Strand: w
      • AT1G02800.1 - [+] show detail - cellulase 2
        Distance: 0; Region: intron7 (CDS)
    Flanking Genome Sequence: GT13443 - 5-prime edge
    ATAAGATATA TACCTGAACT ACACGACCAC TTTCTTTCAC CATCTCGTCT 
    CTCTTTCTGT CTTCTTCTCA CTCGACAAGG GGATATTAAT TAATTCATGC
    TTTAGCAAAA TACAAAATTT ATTTCATTTT TGCTAATTAT CATTATAATA
    AAGTATAGAT TCTTAATTCT TTTATTGGTA TGCTGTAGTC TTGCAAATGG
    GGTCACATTT ATTATGTGCA TTAACTGAAA ATTTACTTGA TAGTCAAGTT
    TGATTTTGAC ATCCAAAGTA TACCAGAGTC AATATACATT GGTTTTGAAA
    CAAACCTGTT TCTT

AT1G02800.1

Model type
Protein coding
Short Description
cellulase 2
Curator Summary
Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.
Computational Description
cellulase 2 (CEL2); FUNCTIONS IN: cellulase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to nematode, pattern specification process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B13 (TAIR:AT4G02290.1); Has 1817 Blast hits to 1800 proteins in 268 species: Archae - 2; Bacteria - 651; Metazoa - 181; Fungi - 17; Plants - 925; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR