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GT13444

CSHL Arabidopsis genetrap mutant lines

Original: GT13444

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13444

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17621560 [Map]; Strand: w
      • AT1G47860.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT13444 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCT CCCTAGGCGA GATATTTCGG 
    ACGGGTGAGC TGACGAGCTG CTTGAGACGG GCGAACGGAT GAGCTACTTG 
    ACGGACCGGC TGGCGAGATA CTTCGGACGG GTGAGCTGAC GAGCTGCTTG 
    AGACCGGCGA ACTGATAAGC TACTTGAGAC GGACCGGCTG GCGAGATACT 
    TCGGACGGGT GAGCTGACGA GCTGCTTGCG ACGGGCGAAC GGATGAGCTA 
    CTTGAGGCGG ACCGGCTGAC GAGATACTTC GGACGGGTGA GCTGACGAGC 
    TGGTTGAGAC GGGCGAACTG GTGAGCTACT TGAGACGGAC CGGCTGACGA 
    GATGCTTCAG ACGGGAGAGC TGACGAGCTG GTTAGACGGG AGAGCTGACG 
    AGCTGGTTAG ACGGGAGAGC TGACGAGCTT CTCTTTGTTT CTAAGTGTCC 
    TCCTGGAATC CCCTTTGACA AGACATGCTA TTCCGTATTT ATA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17621570 [Map]; Strand: w
      • AT1G47860.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT13444 - 5-prime edge 
    CCTACTTTCT CCCTGATCTC GCAGCCGGTC CGTCTCAGTA ACTCATAGTT 
    CGCCCGTCTC GTCAGCTTAC CCGTCTGAAG CATCTCGTCA GCCGGTCCCT 
    CTCAAGTAGC TCATCAGTTC GCCCGTCTCA AGCAGCTCGT CAGCTCACCC 
    GTCCGAAGTA CCTCGTTTGC CCATCCATCT TGAGTAGCTC GTTTACTCGT 
    CCGTCCGAAG TGTCTCGCCA ACTTGCCCGC CCAAAGTGTC TCGCCAACTT 
    GCCCGTCCAC TCGACCTCGT CATTACCTAC TCGCACGTCT CGAGAAGCCA 
    TTCAACTCGT CACTTATCCG CCGGATCATC CCTAAAACTG CCTAACTCGA 
    CATACGACCT TCCTCCAGTA ATGGCCTAGC TCGTTTATCG CGATATGAAC 
    TACGTGTGGC TTGATCCCTT TCTAAGGGTA CGTAGGCAGC CTTTTACAAG 
    GTTCAGCTAT CAAGATCGTC TTCCGGCCTC AAGCTCGTCT

AT1G47860.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.0e-40 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR