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GT13451

CSHL Arabidopsis genetrap mutant lines

Original: GT13451

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13451

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19640502 [Map]; Strand: w
      • AT2G48000.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: intron1 (CDS)
      • AT2G48010.1 - [+] show detail - receptor-like kinase in in flowers 3
        Distance: -875; Region: promoter
    Flanking Genome Sequence: GT13451 - 3-prime edge 
    CCCACCGTTA CTTACCGTTT TCATCCATGG CCCGTTGTGT GCCAACTGGT 
    ATACATACAT CTTTTTTGTC TTCGAATTTC ACAACCACAA AAGAAAAAGC 
    CTTTTTTCCG TCATGTTTGA TGTTGTTGCT TTGCAGGTGT TCGACTGGAG 
    AAGAAACAAG GCACTATGCG ATGGGTTGCC TATGACTGCT GATGAATACG 
    CTAAGGGCAT TACCATTTCT GGTAGACTGA AAAATGTCGA TTTGGACCTT 
    TCCTTGTTTC ACGAGTCTGC AAACAAGACC ACCTCCGTCT ACAATGCTTT 
    GATGGGTGCT TACCTCTGCA ACGGTTTGTC TCATCATTGC GAGCAGCTCT 
    TCCTTGACTT CAATTCTCAA CAAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19640585 [Map]; Strand: w
      • AT2G48000.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G48010.1 - [+] show detail - receptor-like kinase in in flowers 3
        Distance: -792; Region: promoter
    Flanking Genome Sequence: GT13451 - 5-prime edge 
    ACTTTATCCC TGCATGGACG TAACTGCCTA AGGAGCTCAA CAAACGCAGC 
    TCCTTGGATT TTGTTCCTCT CCAAAACGGA GGCAACTTTA CCGGAATCAT 
    TACGGAAGCG CAACAATTGG TTTTTCAATC CCGAAGCATC ATCATCGCCC 
    CCGGATTGGT GGAAGGGAGA CCTGGAGAGG GTAAAGCAGA ATGGGGTCAG 
    AGTCTTCAAG GTTGAAGAAG AGCCACGGGA AAGGCAGAGC AGATCAGATA 
    TCTGGGAAAT CAGTGAGATT CTCCACATGC GCTTCTTCAT GGAGACTAGG 
    AGGAGCAATT GAGATGCTCT CTCTCAAAGT CAAGGGTGAT GATTCGGCCC 
    TTTCGGTTCT ATTTGGGCCT TTTCGTCATT TCTCGGCCCA TTTGAAATGT 
    CCATTTATTT TTGTTGGTTT GAAGTCAAAC GGTGGAATAT AGAATTTCTT 
    AGAATACACA CTTAACACAG ATTCTTTTCT CGNCATGTTC CGGCGGCCAT 
    CACGTGTAGA TTAGTAATTG TGAGCAGCAG AGCTATGATA AGACTAAGAC 
    ACGTTTGGAT TTATTAGATA ATGCAATTAG GCTTGTTATT AAATACGAAA 
    CAGAAACATG AGTAGGTAAG ACCTCTTCAG GATCCAATCA AGAATTTTAA 
    ATATTATCAT CTCTCACCAG ATTACCACTA TTGATTGAAT AGTATGAAAA 
    TGAAACAAAA AGTGAAAGGA AAGTTCTCGT GCAACTTCGT GGATGAGACT 
    CAATTAGGTT CATGACATGT TTTGACCGTT TTCAGTAAAT CAAGTAAATA 
    ACACAATCAA TAATACACTT AAGAGTATAT ATATATTTAA CTAATGACCA 
    AAATATTACT A

AT2G48000.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G30780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48010.1

Model type
Protein coding
Short Description
receptor-like kinase in in flowers 3
Curator Summary
receptor-like serine/threonine kinase (RKF3)
Computational Description
receptor-like kinase in in flowers 3 (RKF3); FUNCTIONS IN: receptor signaling protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G11050.1); Has 112833 Blast hits to 111726 proteins in 4356 species: Archae - 97; Bacteria - 12546; Metazoa - 41926; Fungi - 9138; Plants - 32648; Viruses - 383; Other Eukaryotes - 16095 (source: NCBI BLink).
Link
InterPro Scan - TAIR