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GT13464

CSHL Arabidopsis genetrap mutant lines

Original: GT13464

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13464

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23202946 [Map]; Strand: w
      • AT3G62720.2 - [+] show detail - xylosyltransferase 1
        Distance: 33; Region: intergenic
      • AT3G62725.1 - [+] show detail - transposable element gene
        Distance: 846; Region: intergenic
    Flanking Genome Sequence: GT13464 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTATAAGAGA 
    GTCTACAAGG AAATCATATC CAAAAGTGAT TGTGATGAAT TTTTATTTGT
    TATGCTAAAG AGATTATGAT GAAATAACGT CTACAATAAA TCATTAAATA
    CTCCATACAC GACTCCACCA TGAATGGGAG ATCAAAACAA TTAAGTAAAC
    TACAAACAAA TAAAATTGAA TAAAACAAAT AAACGTGTGT CCCCTAAACG
    CAAAATTAAA AGATACAAAA CAATATATCC TCTCACTCAC TCACGTCGTC
    GTCGTACTAA GCTTGGCCGC TTTGAACGGC GGATGAAGCA GCCCAAACTC
    GTCCTTGGCA TCGAGCGGCC TATCCGTCTG ATTGCGCGTG GGTTTCACGC
    GCCGGCTCCC AAGCGATTTA TGCGTGAAAC CATACATTTG AAGGATCTGA
    TTGTCTCCGA AATTAAACGC TCTATCCATC TGCCGTAGAC ACCGTTCCAC
    CGGATAATCT CCAAATTTCC CGCACGGTTT ACACCCGACG AAATGCGTAA
    CCAATGGCCA CCGATGGTCT CCAAAACCCG GTTTATGATT CTCAATCA
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23202998 [Map]; Strand: w
      • AT3G62720.2 - [+] show detail - xylosyltransferase 1
        Distance: 85; Region: intergenic
      • AT3G62725.1 - [+] show detail - transposable element gene
        Distance: 794; Region: intergenic
    Flanking Genome Sequence: GT13464 - 5-prime edge
    TTCCATCCTA CTTTCTCCCT GCTCTCTTAA GACAGACATA CTATCATGTA 
    TATGAGTTTT TCGTAACTTT AGGATATTTA CTACCTTTGT TCCCAAGACT
    TTTGGTTTAG CCTTTAGCTA TGCTTGTGTT GTGTGTGCTA AAGATTTTTC
    AACAATTACA ATTTTACCTG CAATTTTCAG AATATTATTC TTGTACACCC
    TATACTCTTT GGTTTTACGT ACGTTCCTCT TATTAACATT ATAGCATATG
    CTTATGCATA GAATATTAGT TGAAAAGTTT GAAACGTCGA TGCGTTGTAA
    TGTGTAGTGT ACATAGTGAT CAATGGTTTA ATTGGCATAA TTTCCTTTAG
    ACAAACGAAT CAAAACACTT CAGAGATAAT TTCTTTTGGT GAATTATTGC
    GTTCGCAGTT TTTTTACTCT GAATTTTCTT TTGGAGATTA CATTTAAATC
    ACGTGTATAA C

AT3G62720.2

Model type
Protein coding
Short Description
xylosyltransferase 1
Curator Summary
Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides.
Computational Description
xylosyltransferase 1 (XT1); FUNCTIONS IN: xyloglucan 6-xylosyltransferase activity, UDP-xylosyltransferase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: polysaccharide biosynthetic process, xyloglucan biosynthetic process, root hair elongation; LOCATED IN: mitochondrion, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630); BEST Arabidopsis thaliana protein match is: UDP-xylosyltransferase 2 (TAIR:AT4G02500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62725.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.2e-41 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR