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GT13468

CSHL Arabidopsis genetrap mutant lines

Original: GT13468

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13468

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26852993 [Map]; Strand: w
      • AT5G67290.1 - [+] show detail - FAD-dependent oxidoreductase family protein
        Distance: -3147; Region: intergenic
      • AT5G67300.1 - [+] show detail - myb domain protein r1
        Distance: -1029; Region: intergenic
    Flanking Genome Sequence: GT13468 - 3-prime edge 
    GAAACGGTAG AGGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAG 
    AAACAGCCAG GCTGTATAAA ACTTGTTAAT CAAACAAAAA CAATTAATAA 
    AACACTAACT GTCATCCATT TAAGAACTGC CACGTGTCGG TCGAAAAACG 
    CGGGGTTTTA AAAGCTCTTT GTTCTGGTAT GTACGGTACG AGTCAGGTCG 
    GTAAACGTCA GGTAATGTTC ATGCCCGCTC CCTAACCTTC CCTCTAACGG 
    TTCATACTTC TCCTTTAAAT TAAACTATAG TATTGTTAGT TCTTAATAAT 
    TCAAGTTTTT CCGCAACCCC ACCAAACATT TGAATTTATA CCTTTTGAGT 
    TATATATCTA CATTTTTGGC GATTTGTTGA TAATCTATGA GACATCAGGA 
    GTTTAATACT TTGAGTGAAT T

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT13468 - 5-prime edge 
    GATGCATTAA CCCAAGCTGC TCTATTCTCC TCTTTTACAT ACGAAAACCT 
    AATTTCAATA TACGAGAATG GTTGTCTCAA AAAAAAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26853045 [Map]; Strand: w
      • AT5G67300.1 - [+] show detail - myb domain protein r1
        Distance: -977; Region: promoter
    Flanking Genome Sequence: GT13468 - 5-prime edge 
    CCTACTTTCT CCCTGGCTGT TTCTATTCGT ATTTTCGATA TAATAATTAA 
    ATATATTTCA GGAAACAAAG GCAGTGATGA TTTTGCGTTC CAATTCGGCA 
    ACCTATGTTG TCGTTTTCTG CCACGTCAAA ACCTCCTATC TTTTGTTAAC 
    CGCACATTTT ACATCACGTT TCCTAAACCG AACATTAATA TCTAACCATT 
    TTTATACATT CACTTAATAT CGCTCACACG CTTCTTTGTC AATCCCATTT 
    TAATCCAGCT TCGTTTCAAA TTATTGAGGT TTAGATCTTT TTATGATCAT 
    AGAGCAACTA TATATAGATT TAGTATTGTC AATTTGTCAT GCACTGTTAT 
    ATGCATGAAT TAGGTGTTTG TGTGTTGTTT AGTAATTAAT TATACCTTCT 
    TAGTGACAAT TTGTTTTCTT TATTAGTAAT GAAATTTGTG GTCAATAATT 
    TTGATTAGTT TTCAACCCGG AAAATCGGTT ATATGTAAAG TAGATATTAT 
    CATAAAGTTT TTATGTGAAG TGCTATACAG CCTGGCTTCG CTATTCTAAA 
    GTCAAGACTA AACATAAAAA TAAATAAAAA CTGTCCTTAC CCAAACCTAA 
    CCGGTATCAT CTTTTTATTT TTTTCTTCAG ATATTTCTTT TTAATTTTTA 
    TTTCCCCTAT

AT5G67290.1

Model type
Protein coding
Short Description
FAD-dependent oxidoreductase family protein
Computational Description
FAD-dependent oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G67300.1

Model type
Protein coding
Short Description
myb domain protein r1
Curator Summary
Member of the R2R3 factor MYB gene family involved in mediating plant responses to a variety of abiotic stimiuli.
Computational Description
myb domain protein r1 (MYBR1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 77 (TAIR:AT3G50060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR