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GT13473

CSHL Arabidopsis genetrap mutant lines

Original: GT13473

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13473

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 182935 [Map]; Strand: w
      • AT2G01420.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G01420.2 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13473 - 3-prime edge 
    GTATTTTACC GACCGGTACC GACCGTTTTC ATCCCTAGTC TTACTTGCTC 
    TATGGGCTAA CCTAACCAAG AACGGTAGCT TGGAGTGGAT GATCACAATC 
    TTCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15457018 [Map]; Strand: c
      • AT4G31950.1 - [+] show detail - cytochrome P450, family 82, subfamily C, polypeptide 3
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT13473 - 5-prime edge 
    CCTACTTTCA TCCTGCATCT ATTATCACAT TCACAGACAG TCAAAGATGG 
    CTAAAACGCT CTTATGGCTC GACAATGATC TTCCCAGTAG CATGGCCATC 
    GATACTTTTG GCCCAAGCAT CCTCCGCTTT GCTCAAAGGA TGCTTTGAGT 
    CAATCACTGT CTTCACTTTC CCTTCATCTC ACTCGACAAG ATCTTCTTCC 
    CGAACCAAAT GGCATCAGCT CAAAGTTTTG TCCTCTAACA TCAAAATCTT 
    TTGCTTCTCC TGTGATAAAC CTCTCTGGTC TGAACTCGTT TGGTTCCATA 
    TAAACTTTCG GATCTCTTTG GATTTTCCAT ACGTTCACTA TGAGTCTTGT 
    GCCGCACGGA ACGTTGTAAC CTGCGACCGT GCAATCTTCC ATCGCCTCTC 
    GATGGCCTAA GAGAGGAGCA GCTGGATACA ATCTCAATGT TTCTTTGATA 
    ATCGCTTGGA GATATACCAG ATTTTTTATG TC

AT2G01420.1

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).
Computational Description
PIN-FORMED 4 (PIN4); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: root development, pattern specification process, auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 1811 Blast hits to 1602 proteins in 498 species: Archae - 31; Bacteria - 1046; Metazoa - 12; Fungi - 10; Plants - 485; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01420.2

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).
Computational Description
PIN-FORMED 4 (PIN4); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: root development, pattern specification process, auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 1823 Blast hits to 1616 proteins in 502 species: Archae - 31; Bacteria - 1046; Metazoa - 18; Fungi - 10; Plants - 487; Viruses - 2; Other Eukaryotes - 229 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G31950.1

Model type
Protein coding
Short Description
cytochrome P450, family 82, subfamily C, polypeptide 3
Curator Summary
member of CYP82C
Computational Description
"cytochrome P450, family 82, subfamily C, polypeptide 3" (CYP82C3); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 82, subfamily C, polypeptide 4 (TAIR:AT4G31940.1); Has 32928 Blast hits to 32766 proteins in 1729 species: Archae - 58; Bacteria - 3784; Metazoa - 11595; Fungi - 6894; Plants - 9333; Viruses - 3; Other Eukaryotes - 1261 (source: NCBI BLink).
Link
InterPro Scan - TAIR