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GT13480

CSHL Arabidopsis genetrap mutant lines

Original: GT13480

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13480

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 240322 [Map]; Strand: c
      • AT1G01660.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: intron9 (CDS)
    Flanking Genome Sequence: GT13480 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAATTTGAA 
    CAATGAACCC ACGGGGGTCC TGGTCCACAT ACCTGTGAGA TAGGACATAT 
    GAAATATGAG GGAGGCTGGC GTGTAACGGA ATCCTCATCG GAGAATCCAG 
    AAGGAGTTCC ATGGCGACGA GTGTAACTCT GAAGGAGTAA TAGAATCTCC 
    GAACAGACTG AGCTCGCTGC GTCTTTCTCA GCCGCCACCT TGCTGAGTTC 
    TTCCTCTGTT CCTTTTCTAC GTCTTGCTTC TTCTTCATAC AACCTCATGA 
    AGTTTTGTCC TACAGAGCAA GCTTCTTCCT TCTCCTTCTT CACTTTCTCT 
    AGCTCCTCTC T

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT13480 - 5-prime edge 
    TCCCATCCTA CTTTCATCCC

AT1G01660.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1); Has 73160 Blast hits to 42540 proteins in 2253 species: Archae - 866; Bacteria - 9091; Metazoa - 34168; Fungi - 4977; Plants - 4797; Viruses - 224; Other Eukaryotes - 19037 (source: NCBI BLink).
Link
InterPro Scan - TAIR