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GT13485

CSHL Arabidopsis genetrap mutant lines

Original: GT13485

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13485

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 96581 [Map]; Strand: w
      • AT2G01140.1 - [+] show detail - Aldolase superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT13485 - 3-prime edge 
    GTTACCGACC GTTTTCATCC CTAATAAACA AAACCCTTGG CTTTAAGCAC 
    TCTCCTCCAA ATCCCAGATC TCTCTCTGCC TCTGTCCCGC GGAGTCCCCG 
    AGAGATTGAT CACCATCGCT TTTGTACCTT CCTTGGACTA CCTATGGCGT 
    CTGCTAGCTT CGCTAAGCCT AACACCCTCT CTTCTCCATG GATCGGGCAA 
    CGCTCCTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18710948 [Map]; Strand: c
      • AT2G45403.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 795; Region: intergenic
      • AT2G45406.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 13; Region: intergenic
    Flanking Genome Sequence: GT13485 - 5-prime edge 
    TAAGAGAGAC ATATCTCTTC TCTTGTGAAG AAGACAAGAA CAAAACTTTG 
    TTTTATTGAA ACTGAAACTT GTTAATCTTT ACATGACGAT ACAAGGTGTT 
    TATATAGAAA ACAAATAGAC ACAACAACTC AATTAGTTCT GTCTCTTCAT 
    ACTTGTGTCT CTTTCTACTT GTGCCTCTTG AGTGAAACAA CACAAACTTA 
    CAACCTTTAA CTGAAAACTC AATTACCGAC CAACACTCCC CCTTAATTGA 
    GTTTCGGTCT TGCACTTCCC TTCCTTCTCA GTTTGTCACA ACTTGCCCTT 
    GTTTACTTCT TCTTCCCTTG CAAGTAAATC ACTTGTGTTT TCTCCATCTC 
    AATGGAAAAA CTCTTATGCT TGATCTTAAT ATCCAGTATA CTTCTTCCTT 
    GAGGATAGTT GATGAGACAC CTGACACTAG AAACACCTCT TTAATGATCT 
    TTTCTCCTTG GCTTGACATC ATTTGGATAT TTCCCTTTTC CATGTCTCAT 
    CATTCATGAT GATGATTTTC TTCAACTTCC AGTTCTTCAC CACGTGCCTT 
    GGCTTGTTAC ACACAAAGCA CCTTCTTGTT GCCTACTCGT ATTTGACGTG 
    GCACACTTTT TGAGATTTCT CTTTCCCACA ACGCTTCTCC TTTG

AT2G01140.1

Model type
Protein coding
Short Description
Aldolase superfamily protein
Computational Description
Aldolase superfamily protein; FUNCTIONS IN: fructose-bisphosphate aldolase activity; INVOLVED IN: response to oxidative stress, response to cadmium ion, pentose-phosphate shunt; LOCATED IN: mitochondrion, chloroplast, plastoglobule; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase 2 (TAIR:AT4G38970.1); Has 4797 Blast hits to 4792 proteins in 909 species: Archae - 0; Bacteria - 723; Metazoa - 1159; Fungi - 8; Plants - 476; Viruses - 0; Other Eukaryotes - 2431 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G45403.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34095.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G45406.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT2G44030.1); Has 677 Blast hits to 669 proteins in 58 species: Archae - 0; Bacteria - 19; Metazoa - 64; Fungi - 2; Plants - 579; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR