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GT13486

CSHL Arabidopsis genetrap mutant lines

Original: GT13486

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13486

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15976917 [Map]; Strand: w
      • AT4G33120.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT13486 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC GATGGTGTGT 
    CTTACTTTAA AGAGATGATC TCAAAGTCAG ACAAAACAGA GCTTCAGAGG 
    ATGGCCTCGT TGCTTACGTC TGACTCCGAT TACTTCATCT CACTCGACAA 
    AACAGCTGTT GTTACTATTC AAACGATTCA AGTAGCTTAG AAGAGGCAGG 
    GGAAGCTATG TTGGCTCTTT CTTGTGAAAG AGCTAAAGTG GAAGATGGTC 
    AAAGTGTTCT TGATATCGGA TGTGGCTGGG GATCTTTGAC TTTGTACATT 
    GCACGCAAGT ACAGCAAATG CAAGTTAACC GGTATCTGCA ACTCCAAAAC 
    GCAGAAAGCA TTTATCGATG AGAAATGCCG GTAACTAAGT TTCTCATTAC 
    ATCTTATAAG CTTCAAGTTC TAGCTAGTGT AAGTGGAACT TAAATTTAAT 
    CTAAAATGGC TTGTTTTACA TGTCATATTT GAAGGAAACT CGGGCTTCAG 
    AATGTCGAAA T

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15958183 [Map]; Strand: c
      • AT4G33070.1 - [+] show detail - Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
        Distance: -3412; Region: intergenic
      • AT4G33080.1 - [+] show detail - AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
        Distance: -1779; Region: intergenic
    Flanking Genome Sequence: GT13486 - 5-prime edge 
    TGAATTGCTG CCGAGAGTTA GCTAATCTAC ATAGCATGAT GCACAAAGTG 
    ATTGCATATA TATCTAAGCT GCTGAGTGCT GACCCACCAC ATAAAAACTT 
    TTTTCAACAT ATATTCGTAA GAATTCAATG TTAAGCTAAA ACAACGTGTC 
    AAGAGCATAA TTAGCCAAGC AAATAATGTA AAAAAAACGT AGCATTAAGC 
    AAACGATGAT GAAGATTATC TATGTAAATT CTTGTTATGG GTCCTAACTC 
    CGAACACATA ATTATCTATT AAATTTTCGA TTACAGTAAA ATAAATAGTA 
    TACGAAATCG AACCATAACA CTCAATACCA TAGTTGATAT TTTCAAAAAT 
    ACAGTTTTGT TAGTTGTTAT CATGCTGTAG CTAGCCTAGA ATTAGTACTC 
    AAATTTAAAT ATGATCGATT GCGTGTCAGC TGTAATGCAC ACGATACAAT 
    TTTGAGAAAG GAATCTCTTT GAAAATAAAA GAAAATGAGC TTAAAAAAAT

AT4G33070.1

Model type
Protein coding
Short Description
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
Computational Description
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein; FUNCTIONS IN: in 6 functions; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: TPP-binding enzyme, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central domain (InterPro:IPR012000), Pyruvate decarboxylase/indolepyruvate decarboxylase (InterPro:IPR012110), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (TAIR:AT5G01320.1); Has 20589 Blast hits to 20526 proteins in 2548 species: Archae - 428; Bacteria - 13367; Metazoa - 177; Fungi - 761; Plants - 551; Viruses - 4; Other Eukaryotes - 5301 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G33080.1

Model type
Protein coding
Short Description
AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
Computational Description
AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase, C-terminal (InterPro:IPR017892), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (TAIR:AT2G19400.1); Has 108386 Blast hits to 106080 proteins in 2916 species: Archae - 133; Bacteria - 13489; Metazoa - 38137; Fungi - 11732; Plants - 25721; Viruses - 399; Other Eukaryotes - 18775 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G33120.1

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: (S)-coclaurine-N-methyltransferase activity; INVOLVED IN: lipid biosynthetic process; CONTAINS InterPro DOMAIN/s: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase (InterPro:IPR003333); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G33110.2); Has 8479 Blast hits to 8475 proteins in 1584 species: Archae - 50; Bacteria - 4759; Metazoa - 58; Fungi - 355; Plants - 378; Viruses - 0; Other Eukaryotes - 2879 (source: NCBI BLink).
Link
InterPro Scan - TAIR