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GT13520

CSHL Arabidopsis genetrap mutant lines

Original: GT13520

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13520

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23369057 [Map]; Strand: w
      • AT3G63240.1 - [+] show detail - DNAse I-like superfamily protein
        Distance: -1465; Region: intergenic
      • AT3G63250.1 - [+] show detail - homocysteine methyltransferase 2
        Distance: 1251; Region: intergenic
    Flanking Genome Sequence: GT13520 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTAATC AGAGAGAGGA 
    GTCATACGCA TTTAACAAAA TAAAAAACAA TTAAAGCGTA ATTATATATA 
    CACTTATTAC AACTGGCACA GGGTTTCGTA GAGCCAGATA AAGTTATTGA 
    GCCTTCAAAA TCTTTATTTT TTAAAAGCTT TTTTAATTAC AAAATAAAAA 
    GAAAATGGCT GTTGAAATGT ACAAAATGTA CATTTTGAAA GAAAAAAAAC 
    CACAATTTAC TAAACCCAAG TATTGGACTG AACAAACACA GACACGGTCT 
    CCCACATGCA GCATGTGTCA TTTTAACTTT ACCTTACAAA ATTATATCGC 
    ATAAATTCAT CAAACAATGT CTTAAAAGTG AACACTCGAT TTTATAATCT 
    TGAAAAGTTA GATAAAGCAA AATCTTAGAG CATTGCCCCC CATAAGTTAA 
    CCCCACAAGA TCATATATTT TTCTGTCTTG TGTTTAAACA AATAGGGTTA 
    TTTTCAGTTT GAAAGTTGAC TCTGCCCAAA CCCTAAGGCA CAGTAATTCA 
    AACCCATCTT ATGTTCGTAT AAATTGTACC ATATGTTACT CTCATATGCT 
    ATATATAAGC TAGCA

AT3G63240.1

Model type
Protein coding
Short Description
DNAse I-like superfamily protein
Computational Description
DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: CVP2 like 1 (TAIR:AT2G32010.2); Has 2363 Blast hits to 2040 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 816; Fungi - 600; Plants - 662; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63250.1

Model type
Protein coding
Short Description
homocysteine methyltransferase 2
Curator Summary
Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.
Computational Description
homocysteine methyltransferase 2 (HMT2); CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: homocysteine S-methyltransferase 3 (TAIR:AT3G22740.1); Has 6768 Blast hits to 6760 proteins in 1892 species: Archae - 4; Bacteria - 4264; Metazoa - 340; Fungi - 135; Plants - 163; Viruses - 0; Other Eukaryotes - 1862 (source: NCBI BLink).
Link
InterPro Scan - TAIR