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GT13535

CSHL Arabidopsis genetrap mutant lines

Original: GT13535

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13535

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24233907 [Map]; Strand: w
      • AT5G60180.1 - [+] show detail - pumilio 19
        Distance: 0; Region: exon1 (CDS)
      • AT5G60190.1 - [+] show detail - Cysteine proteinases superfamily protein
        Distance: -634; Region: promoter
    Flanking Genome Sequence: GT13535 - 5-prime edge 
    CCTACTTTCT CCCTTCGCCG TCAGTCATTA GGTTGAACAG AGCTGCGTGC 
    AAGGGCGTGG CGGAGGCGCG TGGGGCGAAT CCAGGAGGAG GAATGTAACC 
    GGAGGTTTCT GTAGGGTTTG GTAAAGCATT GAACATGGTC GAGATTGAAA 
    AGGTATTATC GGAGACTGCC ATTGATGTAT TTCTTGATCT ACAGAAATTT 
    CTCTAGAAAA GGGTTTAATC AGTTTGTGTG ATTTGGGAGA AGTATGAGAG 
    ACTTGTGAAT GAGAGATCTG TGGTGATGCG TAGAGTATTT ATAGAAAAGT 
    TAGGGCTTTT GTTTTTCTAG TTACAATTAC ACAACTCGGA TTACTACTAG 
    GAAAAGGAAA CGGAAACTTA TTTGGTGGAG TTTCCTTTTT GTTTTGTCAA 
    TTTTCCTTTT TTCTTTGCAT TTTCGTAACT GTCATGATTT TAATCTATCT 
    TTTTTTGGTG TGTGAAGATA ATAATAATCT ATCTGAAACA AATGGAAATA 
    TGTAATTTGT TTTTTGTAAA TCGACAATAA TTTAACATGT CGATAATCTC 
    TAAACCAACC CCTCGCAGTC CAAGCTTTTG ATTT

AT5G60180.1

Model type
Protein coding
Short Description
pumilio 19
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 19 (PUM19); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 18 (TAIR:AT5G60110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60190.1

Model type
Protein coding
Short Description
Cysteine proteinases superfamily protein
Curator Summary
Encodes a protein that can cleave residues from the C-terminus of RUB1 to prepare it for conjugation to target proteins.
Computational Description
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity, NEDD8-specific protease activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR