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GT13540

CSHL Arabidopsis genetrap mutant lines

Original: GT13540

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13540

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 147505 [Map]; Strand: c
      • AT2G01280.1 - [+] show detail - Cyclin/Brf1-like TBP-binding protein
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: GT13540 - 5-prime edge 
    CTCTCGGAGC CATTTGTCAC CAGTTGCATA AGCATCAAAA CAATAAAATG 
    GAAAGAGACT TACATCGTCG TGACAGCTCT TACATAATCC ATAACCAAAG 
    CGTTTTAAAT CCTTATGTTT ACAGTTCACT ACTCCTTTGT CAGAATTTGG 
    TCTTGGGGTA AAAGTTTCTT TACGCAATAT CTCTTCGCTT TCATCAAGCT 
    CATCAACCTA GACAAGCATT GTACAACATT TAAAAAAGAA CCAACTAGAA 
    TCGATTTGTA ACATAATCCT GCAAATGAAA TTACTCACAG TTAAACTTCC 
    AGCCTCGGTA TCAGCAAACT CATTCAATCT TTTGGTTATT GTTGCTTCAC 
    ACATATGCAC AACTTTTGCC TGAAAGTTAT ATAGAAAAAC ACATCAAATC 
    GAAACATCTT TGCTCTCATC TTATAACAAG ATTCTTTAAA GAAGCTTGAA 
    TCAGATTCTT ACAATATCTG CCCTAGAGTA CATGATACCA TGAGAAAGTG 
    CAGCCATGTA AATTGCTGCT CCACATATTC CACTTGGTTT CCGGCCTGTC 
    TGCAAGCGAA TAGATGGCCA ACATTAACAC AAGCCATAAT ATATAACTCT 
    TAAGACAAAG AACATGTAGG TAACTATCAC ACCTGTATCC AATCTCTCTT 
    CATA

AT2G01280.1

Model type
Protein coding
Short Description
Cyclin/Brf1-like TBP-binding protein
Computational Description
maternal effect embryo arrest 65 (MEE65); FUNCTIONS IN: RNA polymerase II transcription factor activity, cation:chloride symporter activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670), Brf1-like TBP-binding (InterPro:IPR011665); BEST Arabidopsis thaliana protein match is: Cyclin/Brf1-like TBP-binding protein (TAIR:AT3G09360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR