1. Home
  2. Mutant Lines
  3. GT13542

GT13542

CSHL Arabidopsis genetrap mutant lines

Original: GT13542

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13542

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 347417 [Map]; Strand: c
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: -120; Region: promoter
    Flanking Genome Sequence: GT13542 - 3-prime edge 
    GTAGAGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TAAACAAACC 
    AAAAAACACG ATCGCCGCCA CAAGGGCAAA ACCGTCAATT CACAAGTAGA 
    TCCTGTCACG TGATCCCAAT GATAAAACCA ATCCTCTCTC TCTCTCTCTC 
    TTTTCTCGTA GTCCTTTTTC AGTCATGGCG ATAACCGCAT ACGACGCTCT 
    CACGGAGAGA CAAAAAGCCC CCAAAGTCCT CCTTATTAAC GATTTTGCCA 
    TCTCTTCTTC TTCATCTCAC TCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 347348 [Map]; Strand: c
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: -189; Region: promoter
    Flanking Genome Sequence: GT13542 - 5-prime edge 
    CCCTGGGTTT GTTGTTGTTA AAGAAAGAGT GGAATTTCCG GTTTACTTGG 
    TTTTGGTTTG GGATAACGTG AGATTGGCCT GATTTGATTG TGACGGGACT 
    CATCTTCTTC CGTGTGGTTT GTTTATTAAC GATTTTTGCC CTTTCGGCGG 
    CGATTTTGGT TCATTGGTTT TGTTATTTTA TTGCAAGAGT GGGAGTTCCG 
    GTTAAAGAGG GTTTGGTTCG GTTTAATTTG GTTTGTGACC ACGTGACATT 
    GGCTGATTGT TGCGACATGT CTTTCGTGTG GGTTTGCGTG AATTGACGAT 
    TTTGCTCAAT GTGATTTCTG AATATGTGTT CGTGTTGGCC ATATGGCGTA 
    TTCATGAAAA TAACTTTATA GAAGGTCAAA TAGTATTTAG ATTTAGGATA 
    TATGTCAATC TTCTGTTTCT CTATATT

AT2G01810.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 637 Blast hits to 622 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 216; Plants - 250; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR