1. Home
  2. Mutant Lines
  3. GT13548

GT13548

CSHL Arabidopsis genetrap mutant lines

Original: GT13548

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13548

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18439307 [Map]; Strand: w
      • AT4G39750.1 - [+] show detail - F-box family protein-related
        Distance: 0; Region: exon1 (CDS)
      • AT4G39753.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: -805; Region: promoter
    Flanking Genome Sequence: GT13548 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTTGAGG 
    CGATATCGCG CTTTGTTGAG CTCTTTGGAT ACGACGAGAG AGCGAAAGGA 
    CTTGAGACTA GGGAGAGTTT CGGGTAGTAC GATCTCGATA TGTGTGCTAA 
    ACAGTTCTCA ACGATATAAT CTGGAAGCCA CGGCTGCTTC TTTTTCTGCG 
    GCGGTTCGAC TTCAGAACTC ATAGCGGCAG ACGACGTTTT TGAAATTAGG 
    GTTAAACACG AGAGTCGATG GAGAGTGTTT TTCGATTTTG GACTTTATAT 
    ATTTAATTAA ACACGACTAG GTCAGCATTT GTACCTTTTA TTTTACTTAA 
    CTTATAAATA ACCCCTCTAT T

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18439394 [Map]; Strand: w
      • AT4G39750.1 - [+] show detail - F-box family protein-related
        Distance: 0; Region: exon1 (CDS)
      • AT4G39753.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: -718; Region: promoter
    Flanking Genome Sequence: GT13548 - 5-prime edge 
    AAGATACTTC TTCCACGTCT GCTTACAGCT TCCTAAGAGT CCTCTTCCAA 
    CCTGGTACAC GCTCTGGATA AAACCTGATC AGATCGAGAA GAAGAAGAAG 
    ATTAATACGT TTACTGGAAA TACTCGGTTG GTACAAATAC CATCTTCCTA 
    TCATTATCCT TTTGACCTAG TGTTCATCTT TAATCTTTAT GGTGCTATGC 
    GTTCATCCAA GGCAATGGTC CGTCGCCCTT CATATGGGTT GGTAAGCATG 
    TTTTGAATAG AACTCGTCGT CGTTGTTTGA TTGAGATTGG TAACTACGGT 
    GGGAAACTAT TAATCTTATG GAATAAGTTT GTGCATCCTG GGCAATTTGG 
    AGATAAACAT ATTTGGTGTG AGGTGATTGC TCTTGAAAGA C

AT4G39750.1

Model type
Protein coding
Short Description
F-box family protein-related
Computational Description
F-box family protein-related; BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G28180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G39753.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39756.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR