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GT13555

CSHL Arabidopsis genetrap mutant lines

Original: GT13555

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13555

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 75179 [Map]; Strand: w
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: intron1 (5UTR)
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: intron1 (5UTR)
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -341; Region: promoter
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -341; Region: promoter
    Flanking Genome Sequence: GT13555 - 3-prime edge
    CGACCGTTAC CGACCGTTTT CATCCCTATC CACCACCCAC TGGTTCGTAG 
    ATTCCATAAC CTTGGATTGT GTT
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 75191 [Map]; Strand: w
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -329; Region: promoter
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -329; Region: promoter
    Flanking Genome Sequence: GT13555 - 3-prime edge
    AGAGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA TCCACCACCC 
    ACAGTTCGTA GATTCCATAA CCTTGGATTG TGTTTTCATC TCACTCGACC
    AGCGACAAAT TCCTCCGATT TTAGTGAACA TGTCTCTGAT TTTGGTGTCC
    TGTGGTGGAT CTGCCGGAGC AAGTCTTAAA CTTGACTTGG ACTGTTTTTA
    CTAGCTAATT CTGGGCGCTA TTTCGTCTTC CTTGTTTCCA TTTCTATCTC
    TTTCTCTCTG GCCAGTCCTC ATATGTTATC ATTTCCTAGC TTTGCCACTA
    CTCATTACTT TCCCTTTATC GTGTTTATAT CTTAGCCCTG ATGGAAGCAG
    ACAACGGAGG CCCCAATTCT AGTCATGCAT CCAAACAACG TCTGCGTTGG
    ACGCATGAGC TACATGAACG CTTCGTTGAT GCCGTTGCTC AACTTGGTGG
    CCCTGATAGT AAGTTTCCTT TTTTCTTGTA TAGTCTATGG TAAATTTAGT
    AACTCATGTT TTCCTCATCA ATATCTGTGG TAATAATATG CACACCAATA
    TAATCAAATT GCTCTTCTTG TATGCTTTAC TACTATCCAT GAGAGGGAAA
    GCCTATCGTC TGTTTGCTTA GGGTTCCTAA ACA

AT2G01060.1

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01060.2

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT3G13040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.1

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.2

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR