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GT13558

CSHL Arabidopsis genetrap mutant lines

Original: GT13558

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13558

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7352131 [Map]; Strand: w
      • AT2G16940.3 - [+] show detail - Splicing factor, CC1-like
        Distance: -4723; Region: intergenic
      • AT2G16950.1 - [+] show detail - transportin 1
        Distance: -1716; Region: intergenic
    Flanking Genome Sequence: GT13558 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAAGT 
    TGCTGGGAAA GAGGCATAAG CCAACGAAGC ATGTGCCACG AACTGAGAAA 
    ACAAAGACCA ACTTCCCGAG CCAAAAAAGA TGCTCAGTGC AAAACGTTTA 
    TACATCACAA AGGGTGCTAC TATCCTGGTG TTCATAATTA CCAAGTATGA 
    GGTGAATTAA TTTACTCTTA ATTTTTTTTT CTAATGTAAT TATTTACAAA 
    GGCAAGATTA CTTTCTACTA TGTAGTTTTC AAATAATAGT ATAGGTCATC 
    TCTCAATTAT ATAGGGCTTC ATCTCACTCG ACAAGCGTCG TATAGCCAAT 
    TCCGAGAAGT AGAAGAAGAA GATTGAGCCA TACACCTTCG TAAATGGTGC 
    TGAGAAGAAA TGAGATATAA CTTCGAGACA ATTTTATGAG TTTTTATTTT 
    TCGACGAAAC TTTGTTGAAG TTTTCACTTG ACAAGCTAGG TCAAGAACAG 
    AAGTCAGCAA ACTAATATTG AAAACTAAAA

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT13558 - 5-prime edge 
    GAAACTCACT GCTACATCTT TGGAGTCTTC TGACTTCTCG CCTGCACTTC 
    CCCACCAACA TACTCCTCCG ACATGACATG TAAAGAACGC GACGGCATCA 
    CTTAGATGGG CAACTATGGC ACAATCTCTC CTCTCCACTC GACAAGGACT 
    AAACATCATA TAAATTTTTT CCAATTTTTT TATTCCCCCC AATAAGAGTT 
    TGAAAGGCTT TCCTATAACC CTGAAAAGGG C

AT2G16940.3

Model type
Protein coding
Short Description
Splicing factor, CC1-like
Computational Description
Splicing factor, CC1-like; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Splicing factor, CC1-like (InterPro:IPR006509), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: Splicing factor, CC1-like (TAIR:AT5G09880.1).
Link
InterPro Scan - TAIR

AT2G16950.1

Model type
Protein coding
Short Description
transportin 1
Curator Summary
Nuclear import receptor for AtGRP7.
Computational Description
transportin 1 (TRN1); CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G16960.1); Has 1831 Blast hits to 1766 proteins in 228 species: Archae - 0; Bacteria - 2; Metazoa - 686; Fungi - 563; Plants - 278; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).
Link
InterPro Scan - TAIR