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GT13562

CSHL Arabidopsis genetrap mutant lines

Original: GT13562

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13562

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21196118 [Map]; Strand: w
      • AT3G57280.1 - [+] show detail - Transmembrane proteins 14C
        Distance: 402; Region: intergenic
      • AT3G57290.1 - [+] show detail - eukaryotic translation initiation factor 3E
        Distance: 432; Region: intergenic
    Flanking Genome Sequence: GT13562 - 3-prime edge 
    GTAGAGGTTT TTACCGACCG TTACCGACCG TTTTCATCCC TACTCGCAAG 
    AAATGGGAGA AGACGTATTT GATTGATTTG AATAGAACTT CCATTTGGTG 
    TCGCCGCCAT CCGAATTTGC CAACAAAAAC AATCACAACA TTTCAGAAAA 
    ATAAGATTTT GCTTCATAAT TGGAAGATAA CTGGCCGTAC TTTAATTATA 
    CATGATCCGG AACAAAATTC TTATGATTTT AGCTTTTAAA TTTCAGCATA 
    AAGGGGTTTC TAACTTTCTA TCGCTTATTT CCCAAGTTTA CTCACTGTAT 
    AACTGATAGA CGCATTATTT CTTATTATTG TTTCAGGATT GAGCTAGCAA 
    TAACTTTTCT ATATTACTTA TGTTTTAGTC TTCTTTCTTT ATCTCTTTTT 
    ATTTATTTAT TACTATGATA TTCGAATATA GACAATCAAA GCATATCTCA 
    CAAATAAGAA AATCAAAACT TTAGATTATG ACACTGGAAA GAACAGGTCA 
    CAAACAAAAC CAAGTGTATC AATTCGTAAA GAGTATAAAA TTACACCAGT 
    AATCCAACAG ACCAGAGTTA TCAAAAGAGA GAAGATCTCC ACTTTTTTAA 
    ATCTAAACCT ATGTAAAGTC CCTTCAGTAT GAAGGACTAG TCGCAGATGG 
    TTTCAATTTC TTTGGAGGTG GGTTTCCTCC AGAGAGCACC ACATATGAAT 
    AGAAACACAA CATGCAAGCA CTGCAATGAA AAAGACGTAA ACACACGGTT 
    ACATGAATCC ACGAAAGATC AT

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT13562 - 5-prime edge 
    CTTGCGAGAG TTGAATGACA TATCTCTTGT TTCATGTCCC TTCCATCTGA 
    TATACACAAA CGTCCTTCAT CTCACTC

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT13562 - 5-prime edge 
    GATATACACA AACGTCCTTC ATCTCACT

AT3G57280.1

Model type
Protein coding
Short Description
Transmembrane proteins 14C
Computational Description
Transmembrane proteins 14C; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0136, Transmembrane (InterPro:IPR005349); BEST Arabidopsis thaliana protein match is: Transmembrane proteins 14C (TAIR:AT3G20510.1); Has 169 Blast hits to 169 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 27; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G57290.1

Model type
Protein coding
Short Description
eukaryotic translation initiation factor 3E
Curator Summary
Encodes a protein that is found in not only the eif3 complex but also in association with subunits of the COP9 signalosome. eIF3e appears to be subjected to proteasome-dependent degradation that requires the PCI domain of eIF3e. The level of eIF3e present in cells appears to affect the rate of translation.
Computational Description
eukaryotic translation initiation factor 3E (EIF3E); FUNCTIONS IN: protein binding, translation initiation factor activity; INVOLVED IN: flower development, response to salt stress, translation, photomorphogenesis, transcription initiation; LOCATED IN: signalosome, eukaryotic translation initiation factor 3 complex, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor 3, subunit 6, eukaryotic (InterPro:IPR016650), Proteasome component (PCI) domain (InterPro:IPR000717), Eukaryotic translation initiation factor 3 (eIF3), subunit 6, N-terminal (InterPro:IPR019010); Has 641 Blast hits to 638 proteins in 243 species: Archae - 0; Bacteria - 2; Metazoa - 287; Fungi - 119; Plants - 138; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link
InterPro Scan - TAIR