1. Home
  2. Mutant Lines
  3. GT13565

GT13565

CSHL Arabidopsis genetrap mutant lines

Original: GT13565

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13565

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 76797 [Map]; Strand: w
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: -1413; Region: intergenic
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 3636; Region: intergenic
    Flanking Genome Sequence: GT13565 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGG 
    TCCTGTATTA TGGAATTTAG CGAAACCACA CACTTGCNGG GTAAAAATAA 
    TGATGACAAA ATGATATACA TTGGAATGTA GAGAAAGTAT ATACAAATAC 
    TAATAAATAG AAAAGGGCAT GGAATTGACG AGGATCGAGG GAAAGTGTGG 
    TGTGGCAGAA ATGTTATTAA GTGTGAAAAC AACTGATGAA TGAGCCTTTG 
    CTTAATCACT TCCATGCACA AGTCCCTTCN CTCTTCTCTT CAACTCGACA 
    AANANNNAAN TTTGCGTCCT TTAAAGAAAA GAAAAGAAAA AATATTTTTC 
    ATCCAATTGA ATTCAAACCG TAACCACATT AGATTTAACT TCGTTTATTT 
    TACATTATCT TCTTCTTCTT ATTTTGCGGA GAAGACTTGT ACGATGACCT 
    CAATACGCTG AAGAGTTGGA TTCACTGCGA GTGTATATGT GCATGTAGAA 
    ACAAAATATC TAGCTATATG ACCACTTTTA ACTCTAAATA TGGGTGTAAT 
    ATGCCAAGGA CTTTCTGGAG ATCCACCACA ACAACATTCA AGTTCAAGTT 
    CTGCTGCTTT TACGTCTATG AAAACAACAC CAACCTTATT TTCATATTGT 
    TCTCTCTTTA TCTCATGCAT AAGTATATTT TCATATTGTT CCCTCTTTAT 
    TTTCATGCTT TT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10910307 [Map]; Strand: w
      • AT3G28910.1 - [+] show detail - myb domain protein 30
        Distance: -850; Region: promoter
    Flanking Genome Sequence: GT13565 - 5-prime edge 
    CTACTTTCTC CCTGGATATT GACATATATA ACGTACAATT AATTTCATCA 
    AAACTTAATG TGGCTGTATG ACTTGTGTCT ATCAAATCCA AAAATCTTCA 
    TTATCTTGTA TACCAAATTC TCATACAAAT ATCTCTATA

AT3G28910.1

Model type
Protein coding
Short Description
myb domain protein 30
Curator Summary
transcription factor myb homologue
Computational Description
myb domain protein 30 (MYB30); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 96 (TAIR:AT5G62470.2); Has 9437 Blast hits to 8283 proteins in 550 species: Archae - 0; Bacteria - 9; Metazoa - 928; Fungi - 510; Plants - 5797; Viruses - 10; Other Eukaryotes - 2183 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00190.1

Model type
Protein coding
Short Description
pectin methylesterase 38
Computational Description
pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR