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GT13566

CSHL Arabidopsis genetrap mutant lines

Original: GT13566

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13566

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 224872 [Map]; Strand: c
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT13566 - 5-prime edge
    CCTACTTTCT CCCTGTATGT ATTATCATTT CACTTTAGAA TAGTTAATAG 
    GCGTCTCCCG AAAATAATTT ATAATTTTGT TGTAGTATCT AGCTCATGAA
    GGAATTTGCT CATCCTAAAA GAATTAATTA TTTCGTATTT TTCTGCTTAG
    CATGAATTAG ATCCTGCGAG TTACAATAAA GACAACAATG CTAATAATGA
    AGATCATGGG ACGACTGAAG AATCTGATCA GAGGGCATCA GAGGTTGGTA
    AATACGCCAC ATGGAGAAAT CTTGTTACTT GGTCGATAAC TCAACAACCG
    GAAGAGATTA ATATCGACGA AAATGTCAAC GGAGAAGAAG AAGAAACGAG
    GGACAACCGG ACTTTAAATC TCTTTCCGGT TAGGGAGTAC CAAGAGAAAA
    CAGGCCGGTT GATAGAGAAG ACGAAAGCAT GCAACTACTG TTACTACTAC
    GAGTTCATGC CTCTGAAGAA CTGAAACAAA AAACCCATGT GTGAATAATA
    AATAGGACTT TAATGAAGGT TTTATTTGTT GTTTTGTCCA CGAATGGTAA
    GTGATGTGTT CTTATAATAG AAGAGAAGCG TTTGAAGATG GAGACGTGTA
    GTAAATGTTA TATAGGAGCG TTTGAAGATT ATTATTGTTA GTTATTACCC
    AAATGAGAAG GTGGACCATG TTGGGGCTTG GGGTTTGGAG TTGCAACTAT
    CTATACATAT GTCTGAAAGT GAAACTGAAA GCTTCGATGG TTCCTTGTCA
    ATGTAAGGAA TATATATTAA TTAGATGTTT GT

AT2G01500.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.
Computational Description
PRETTY FEW SEEDS 2 (PFS2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: primary endosperm nucleus, nucleus; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 1 (TAIR:AT3G18010.1); Has 564 Blast hits to 564 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR