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GT13568

CSHL Arabidopsis genetrap mutant lines

Original: GT13568

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13568

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1992339 [Map]; Strand: w
      • AT4G04145.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT13568 - 3-prime edge
    GGTAGAGGTT TTTACCGACC GTTATCCACC GTTTTCATTA CCATGTTACT 
    TAGAAATCTT GATGCCCTTT CTCTATTCAT TGGTTATACA ATATATACAC
    ATATACAAGA ATGTTCTCTA AGTAATATCA ATACACATAT GGCAAGTGAA
    TAATACGTAT TCCCTTGTCT ATCAGAGAAT CCCTAATCGC TCGTTTAAGA
    TCGGGATCAA GCGATTGGCT TCTCTTGATC TCGTTATATT TAAAAGAAAT
    GATCAGTTTC CGGTCAAGCT CCTTGAGAAA GTGGCTGAGG AATGTTTGAC
    GGATATCTTC TCCGCTGAAG CTCGGAAAGG CGTCGTATAG CCAATTCCGA
    GAAGTAGAAG AAGAAGATTG AGCCATACAC CTTCGTAAAT GGTGCTGAGA
    AGAAATGAGA TATAACTTCG AGACAATTTT ATGAGTTTTT ATTTTTCGAC
    GAAACTTTGT TGAAGTTTTC ACTTGACTAG CTAGGTCAAG AACAGAAGTC
    AGCAAACTAA TATTGAAAAC TAAAACAAAG GAAAATATAA TAATTTAGAA
    ACTACAGTAA AACATCTGTA ATGTGGTCGA ATGAGTACCT CGTAAGTTTC
    TTAAATCATT ATCTCACACA ACTATTTTCT TCGTAAACAT TTGCTTTACT
    TGCTGGAGAA GGAATCTTTT CTTTTTAGAA TTTTGTATGC TTGTTTTTTT
    TTGAATGTTC GTTTTA
  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT13568 - 5-prime edge
    TCCTACTTTC TCCCTGAGAT TCAGAGCCTT CTCTCTAAAA CCTAAAATTC 
    TCAGCAGCCG CCACTCTCAA AATTCTTTCT TCTTCTTTCA CAAACACTCT
    GTTTCTTCGT TTCTTCCTCT GTTCCTCTAC TCAACCATGG CTCAAGCAAT
    CGACAAAGTT TTCACTGTGA CTCACATCAA GTCACACATT CCTCTTGTTC
    TCGACATGCA CAAGATGAAC TACGACGCAT GGCGTGAGTT ATTTGAAACT
    CACTGCTACA GTTTTGGAGT CTTCGGACAT CTCGACGGCA CGTCCACACC
    AGCAAACGCC GCCGACATGA CATGGAAAGA ACGTGACGGC ATCGTTAAGA
    TGTGGATCTA TGGCACAATC TCTTCATCTC ACTCGAC

AT4G04145.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.8e-189 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)
Link
InterPro Scan - TAIR