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GT13569

CSHL Arabidopsis genetrap mutant lines

Original: GT13569

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (uncomfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT13569

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14690503 [Map]; Strand: w
      • AT2G34820.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G34825.1 - [+] show detail - RALF-like 20
        Distance: -908; Region: promoter
    Flanking Genome Sequence: GT13569 - 3-prime edge 
    CGGTAGAGGT TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGATCTT 
    GAACCATTTC ACACGGTACC AAACACACTT CCTCTGTTGA TAACTTCTCC 
    TGGATTGCTT GCGATTCAAG CAAATACTGA GTTTCCATTT GCACATTAGA 
    GCTACCCTGC GTAAACAAAT TAAGAAGCTT GTGAGAAAAC ACGATTAGAG 
    TTTCAATTGG ATGATAAAGT TCTTATTTGG GGTTGGTTAT TACCTTCTTT 
    GTGGTCTGCA TCAGTTGGAG AATCCCAACT TGACTCTGCA AAAACTTGAC 
    ATACTTAGCG GCGGCTTGGA ACATCTCGGC GGTGTTAAGT TTATTGCCAC 
    CGGGGATGAG TTTTCCGAGC TCGTGAGTCT TCTCTGCAAT TC

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT13569 - 5-prime edge 
    TCCTACTTTA TCCCTGAGAT TCAGAGCCTT CTCTCTAAAA CCTAAAATTC 
    TCAGCAGCCG CCACTCTCAA AATTCTTTCT TCTTCTTTCA CAAACACTCT 
    GTTTCTTCGT TTCTTCCTCT GTTCCTCTAC TCAACCATGG CTCAAGCAAT 
    CGACAAAGTT TTCACTGTGA CTCACATCAA GTCACACATT CCTCTTGTTC 
    TCGACATGCA CAAGATGAAC TACGACGCAT GGCGTGAGTT ATTTGAAACT 
    CACTGCTACA GTTTTGGAGT CTTCGGACAT CTCGACGGCA CGTCCACACC 
    AGCAAACGCC GCCGACATGA CATGGAAAGA ACGTGACGGC ATCGTTAAGA 
    TGTGGATCTA TGGCACAATC TC

AT2G34820.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G30670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G34825.1

Model type
Protein coding
Short Description
RALF-like 20
Curator Summary
Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
Computational Description
RALF-like 20 (RALFL20); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: Rapid alkalinization factor (RALF) family protein (TAIR:AT2G32885.1); Has 39 Blast hits to 39 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR