1. Home
  2. Mutant Lines
  3. GT13583

GT13583

CSHL Arabidopsis genetrap mutant lines

Original: GT13583

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT13583

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 7129926 [Map]; Strand: c
      • AT3G20440.1 - [+] show detail - Alpha amylase family protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G20440.2 - [+] show detail - Alpha amylase family protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G20440.3 - [+] show detail - Alpha amylase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT13583 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACCCTGAA 
    GCAAAATCTC TGAAATCGAA ATGGCGTTTG AAAATCTCAT CTTTAAGGTC
    TTTCAAAGCT TTATGCCTAC AGAAAAACGA ACAGGCTTAT TATACACAGC
    TGTAATCAAA ATTGATCCTT TTTTGTTGCT CAAAATCAAA GTTGATACAT
    TTTTATACCT TTCCCGGAGA AATTGAGCAA AGATTCTGTC AGCAATTCCG
    AGTCTGGTGA GAAACCCAAC AGGGTCAACT CCAGCCTCAG CGTCGCTAGT
    GCTCTGGCTC TGACTCTTCT TTTTCTGTTT CTCCTGGCGT GGTCTCTCGG
    CGGCGAAGCA AGTGATTTTC AACTTGATCT TCCTGGGAAA ATTGACTCCT
    GAGATTCCCA GGCGCCGTTT CTCGGAAACG ACAAGATTGT TTGGGTGGAA
    AGAGAATCTG GTTTGATTAG AGAGGGACAC CATTTTTGTT GGTGCTACGA
    AGAAGATTTG TTCATCTCAC TCGA
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 7129873 [Map]; Strand: c
      • AT3G20440.1 - [+] show detail - Alpha amylase family protein
        Distance: 0; Region: intron2 (CDS)
      • AT3G20440.2 - [+] show detail - Alpha amylase family protein
        Distance: 0; Region: intron2 (CDS)
      • AT3G20440.3 - [+] show detail - Alpha amylase family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT13583 - 5-prime edge
    TTCCATCCTA CTTTCTCCCT GCTTCGGGTA TCTATCCTCT TGGTCCCAGT 
    TTCTTTCTGA CAAGATTTTG ATCCTGGATT AGTGACTGAT GTGTATCCAA
    AATGCTTTGT CTAATGAATA GCCTTCTTTT CATTGTAGAT TTGAGTTATT
    GGGGATGCAT CGACATATGG AACACCGGGT TGACTTTATG GACTGGGGTC
    CAGGTTCTGT CTCTTGCTCT AATCTTAAAA TTTCATTAGT CAGTTCATTA
    CTTACATTTG GTTCAGAAAC AAAATGAATG ATGTTCTGAA ACTTGATTTA
    GTAATTTGCG TCTGTTGGGA AGTTTGATAA TACTAACGAA GCCTAAATTC
    AGGTTCTCGT TATGGGGCTA TAATCGGAGA TTTCAACGGA TGGTCACC

AT3G20440.1

Model type
Protein coding
Short Description
Alpha amylase family protein
Curator Summary
BE1 ia a putative glycoside hydrolase. It plays vital roles during embryogenesis and in carbohydrate metabolism. Mutation in BE1 has pleotrophic effect on the whole plant development.
Computational Description
EMBRYO DEFECTIVE 2729 (EMB2729); FUNCTIONS IN: cation binding, catalytic activity, alpha-amylase activity; INVOLVED IN: post-embryonic development, carbohydrate metabolic process, embryo development ending in seed dormancy; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl hydrolase, family 13, all-beta (InterPro:IPR013780), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Alpha-amylase, C-terminal all beta (InterPro:IPR006048), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: starch branching enzyme 2.1 (TAIR:AT2G36390.1); Has 7798 Blast hits to 7473 proteins in 1903 species: Archae - 76; Bacteria - 5544; Metazoa - 204; Fungi - 180; Plants - 1205; Viruses - 0; Other Eukaryotes - 589 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G20440.2

Model type
Protein coding
Short Description
Alpha amylase family protein
Curator Summary
BE1 ia a putative glycoside hydrolase. It plays vital roles during embryogenesis and in carbohydrate metabolism. Mutation in BE1 has pleotrophic effect on the whole plant development.
Computational Description
EMBRYO DEFECTIVE 2729 (EMB2729); FUNCTIONS IN: cation binding, catalytic activity, alpha-amylase activity; INVOLVED IN: post-embryonic development, carbohydrate metabolic process, embryo development ending in seed dormancy; LOCATED IN: plastid; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl hydrolase, family 13, all-beta (InterPro:IPR013780), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Alpha-amylase, C-terminal all beta (InterPro:IPR006048), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: starch branching enzyme 2.1 (TAIR:AT2G36390.1); Has 10844 Blast hits to 10504 proteins in 2056 species: Archae - 101; Bacteria - 8205; Metazoa - 231; Fungi - 225; Plants - 1250; Viruses - 0; Other Eukaryotes - 832 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G20440.3

Model type
Protein coding
Short Description
Alpha amylase family protein
Curator Summary
BE1 ia a putative glycoside hydrolase. It plays vital roles during embryogenesis and in carbohydrate metabolism. Mutation in BE1 has pleotrophic effect on the whole plant development.
Computational Description
EMBRYO DEFECTIVE 2729 (EMB2729); FUNCTIONS IN: cation binding, catalytic activity, alpha-amylase activity; INVOLVED IN: post-embryonic development, carbohydrate metabolic process, embryo development ending in seed dormancy; LOCATED IN: plastid; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Alpha-amylase, C-terminal all beta (InterPro:IPR006048), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycosyl hydrolase, family 13, subfamily, catalytic domain (InterPro:IPR006589), Glycosyl hydrolase, family 13, all-beta (InterPro:IPR013780), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: starch branching enzyme 2.1 (TAIR:AT2G36390.1).
Link
InterPro Scan - TAIR