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GT13593

CSHL Arabidopsis genetrap mutant lines

Original: GT13593

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13593

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15551965 [Map]; Strand: c
      • AT4G32200.1 - [+] show detail - DNA-binding HORMA family protein
        Distance: 0; Region: intron11 (CDS)
    Flanking Genome Sequence: GT13593 - 3-prime edge 
    AAACGGTAGA GGTTTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGCT 
    AACTCACTTG TTACCTAATT GTAGTTCGAA TTCGAGTTCT ATGTGCTCTT 
    GTTGTCACCT GTTGTCTGTG CAATAATGGG ATCCCAACAT CCCCGAGGAT 
    GGCCTTGTCG TTATCAATGG GCCAGATGAC AGTAAAGCGA GGTTCAGTAC 
    AAAGTGATCA TTTCCGAATC GATTCGTATT TCGAACGTAT CTGACACGTG 
    TCAAATCGCC GCGTCTGTAC GCGCGCGTGA AGCTCAGGAA CCGAAGCGTC 
    TCGTAGGTTT AATGATGACC TCGTAGGTTT GTCGCCCAAT CGCCTCTATT 
    TATATTAGAT TAAACCCTCG GGAAATCATT TTCCGCCGCT TGCAAGAAGA 
    ATCTAAGGTA GCTCTCGCTC TCTCCTCTGC GAATTATTTT GTACTCTCGA 
    TTCTTTATCG ATTTTTCCGG CAATGGGTAA GGTTGT

AT4G32200.1

Model type
Protein coding
Short Description
DNA-binding HORMA family protein
Curator Summary
meiotic asynaptic mutant 2, homologue of ASY1
Computational Description
ASY2; FUNCTIONS IN: DNA binding; INVOLVED IN: synaptonemal complex assembly; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: DNA-binding HORMA (InterPro:IPR003511); BEST Arabidopsis thaliana protein match is: DNA-binding HORMA family protein (TAIR:AT1G67370.1); Has 963 Blast hits to 893 proteins in 304 species: Archae - 15; Bacteria - 206; Metazoa - 200; Fungi - 133; Plants - 165; Viruses - 16; Other Eukaryotes - 228 (source: NCBI BLink).
Link
InterPro Scan - TAIR