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GT13615

CSHL Arabidopsis genetrap mutant lines

Original: GT13615

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT13615

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14638131 [Map]; Strand: w
      • AT2G34700.1 - [+] show detail - Pollen Ole e 1 allergen and extensin family protein
        Distance: -2504; Region: intergenic
      • AT2G34710.1 - [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containin...
        Distance: 1192; Region: intergenic
    Flanking Genome Sequence: GT13615 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TAGTAGCCTC 
    TTCCCTCCAT GGCTCTATCA CCATAAGAAA ACTTTGAGGT CATGTCTTTG 
    GCTTGCACAA TCCATTGACA ATAGTATTAC TATATATGAA GGAGCATTAT 
    TAAGCAATAG TATGTTATTG ACTTGAATAG TTTGTTTATC TATAAAATAT 
    ATAATAACAA AAATCAGAAG TGGAAACTAT AATATCTAAA CTACTCTTCC 
    GTTCCATTTT AAATGATATT TAATCAGATG AGGAGGAGAC CAACAAGCAC 
    GGTGGCTATA ATAATGTAAC CAATATTCTT CATATTGCTC TTCGAATTCA 
    CTGCACCAAA AATTTCTTCT TTTTAACTTT GTTTTGTGTC TTCT

AT2G34700.1

Model type
Protein coding
Short Description
Pollen Ole e 1 allergen and extensin family protein
Computational Description
Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 31 (TAIR:AT1G28290.1); Has 194 Blast hits to 194 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G34710.1

Model type
Protein coding
Short Description
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Curator Summary
Dominant PHB mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain. Has overlapping functions with PHAVOLUTA, REVOLUTA and CORONA.
Computational Description
PHABULOSA (PHB); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT1G30490.1); Has 3393 Blast hits to 3288 proteins in 275 species: Archae - 0; Bacteria - 20; Metazoa - 905; Fungi - 114; Plants - 2320; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Link
InterPro Scan - TAIR