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Mutant Lines
GT13616

GT13616

CSHL Arabidopsis genetrap mutant lines

Original: GT13616

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13616

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 3; Position: 23062169 [Map]; Strand: w
- AT3G62320.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
  Distance: 0; Region: exon1 (CDS)

AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACT 
AATAATCCCG CTTCCTTATG TACAAGGTAA TAAGCTGCCC GTTTCTCTCA 
CCAATTTCCT CAATCTTCCA GATTTCACCT TTACAGGTGT TGGTATAAAC 
AAGGCTTTGA AAATGCTCAA GAACGAGTGT GGCTTGACCT GCCAGAATGC 
CGTTGATATC CGACCTTCTG CGCGGGCCTC TCTCAGCTAC ATTCTGGGCG 
AGATCAAACT TCATTTCAGG CGTGGGGTCT CGTTTTGAAA ACCTACCAGA 
CCTATCTATG AACATTGGGA CAATGACAGT CTTACCGAGG ATCAGATCAA 
TCTTGCAGCA ACCAATGCTT ACTTGGCTTT CAAAGTTGGG AATTTGATTA 
GAGAAGCTAT GTATTGAGTC ATGCCTCTGT TTGTTTTTTT GTTTGTTTCA 
GACTCACCTA TGTTTTGTCT TGTTTTGCTC GTCAATTGCC TGCAGCTCAA 
TGGACGATTT TGTCACCATC TTAAATCATT TTGGCCCCAA AGTCTAATAT 
TTGGTAAGGT ATGCCCGTAT GGGATT

5 prime edge [+] show sequence

Chromosome: 1; Position: 30146687 [Map]; Strand: c
- AT1G80140.1 - [+] show detail - Pectin lyase-like superfamily protein
  Distance: 0; Region: exon1 (CDS)

TCCTACTTTC TCCCTGCATG TGATATCAAT CATGGCCAGT GGTGGAGGGA 
TTTACAATGA AAAGGAGAGG TTTGGGTATG CAAGGACCCG TGAAGTGAAG 
GGAGTTGAGG AGGAACACCT TCCCTGCTGG TACGTTTACA CTTCCCATTT 
TGGAGCTTCC CTTACAAGCA TCCTCCCACG CCTTTTGGAA CGCCTTGTTT 
TTTTT

AT1G80140.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Computational Description: Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, leaf; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G70500.1); Has 3888 Blast hits to 3869 proteins in 461 species: Archae - 6; Bacteria - 1036; Metazoa - 13; Fungi - 1239; Plants - 1472; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G62320.1

Model type: Protein coding
Short Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT5G48350.1); Has 111 Blast hits to 111 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link: InterPro Scan - TAIR