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Mutant Lines
GT13620

GT13620

CSHL Arabidopsis genetrap mutant lines

Original: GT13620

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13620

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 4; Position: 220894 [Map]; Strand: c
- AT4G00480.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  Distance: -1151; Region: intergenic
- AT4G00490.1 - [+] show detail - beta-amylase 2
  Distance: -1426; Region: intergenic

ACGGTAGAGG TATTTTACCG ACCGTTACCG ACCGTTTTCA TCTCACTCCC 
AAACGTTATT TGTTTACCAT CAAAGCACTA TTTTGTCCGA AGTAAGTAAA 
TATAGCAAGT GGCAGTAAAA AAATAGTAAT AAAATTGAAG GCAAGATCAG 
GAGAGAGCTG GCTGAAATGA AGGCAAGAAA CTCGTGAAAA TAATAATTGA 
TCCATCTCTA TCCACGAAGC CCTACATAAT TTAGTAACGC ACCACTTGTG 
GTTGCATGCA CATTTATTTC CATAACGACA AAACTTTGTG TTTAATTTTA 
TAAATTATTT CTGTTGGCAC AACACACTCA TTATAGCCAT ATGTTTGTGT 
TTATATTTTC TATTTTCATA GAAACAATTA ATTTAATTTT AGATGCCCTA 
GACATTTTTT AAATGTATAT AATAATAAAA TTATAGTATA AAAGTCTATA 
TATTACCCTA AATTTTACAA AACATATACA ATCCTAACCA ATGGGATCCT 
ATATCAAATT GCATTCAGGA TGAAAAAGAA GCGACATGAA CCACGACAAA 
GAGAAAAGTT AGATAAATTT AAAGTTGAGT GAGAACTTGA AGTCTTTAAT 
TCTCATTATA CAAGCAACAA TTTTCTTTCT TCGGAGAGAA AGAAATGAGA 
GATTGCACAA CACTTCAAGT TCTCTCCTAA GATTGTTTTG TGGCAGATTG 
ACATAACCAT CCGTGACAAT ATCGCAAAGG TTTGTGGAAG ATTGTTGTCC 
CAAATCCAAT GGTTCACCCA AACCTAGTTA CTATAGTTGG G

AT4G00480.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary: MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus
Computational Description: ATMYC1; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G63650.3); Has 1473 Blast hits to 1082 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1458; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00490.1

Model type: Protein coding
Short Description: beta-amylase 2
Curator Summary: Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.
Computational Description: beta-amylase 2 (BAM2); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 7 (TAIR:AT2G45880.1); Has 836 Blast hits to 835 proteins in 165 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 0; Plants - 686; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link: InterPro Scan - TAIR