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GT13628

CSHL Arabidopsis genetrap mutant lines

Original: GT13628

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13628

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14666191 [Map]; Strand: c
      • AT2G34760.1 - [+] show detail - pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 ...
        Distance: -115; Region: promoter
      • AT2G34770.1 - [+] show detail - fatty acid hydroxylase 1
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT13628 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC GACAATCATC TATATAGTGA 
    ATGATTCAAT TGAAAAGAAC TTTTGGTTAA GCCATTTTTC TCTTTAATAG 
    ATTATGTGTC TCAACTCAAT TAGGAACTGT GTGTTTTTTT GTTTCCTTGA 
    TGTTAACTTG TGAGTTGATT TATTTGGGTA GTTTACTTGT ATATATATTT 
    GGTGGTGGGT CCTGGAGGGA AATGAGTGAG AGGGAGCTCT GTTCATACAT 
    TCTATGTTTT TAAATGATTA GTATTTTTCT TTCATCTAAT ACTTGCTTTT 
    TGTGCTAGGA ATTTCGATTT TTGGGACTAA TTTATCGAGT ATATATAATT 
    GGATAAGTGA GTTTGGTATT AATATTAAGA GCAATTAGGT TGGTTATCTT 
    GCCAAACAGT AGACCCCTGT CGTTTTCTTA GTCATTTAAG AAGTAATGCT 
    TAAGATTCAG GCCTCTAATC TGGTTATGAT AGTGAAGAGG ATCTGTAAAT 
    TTACCTATAC GACCTGTTGA AAAGGACCTC TGGTGTTTGT TACTATGCGT 
    TTCTGATCAA TATAACATAG TTG

AT2G34760.1

Model type
Pseudogene
Computational Description
pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 from (Zea mays); blastp match of 47% identity and 3.0e-15 P-value to SP|Q41784|TBB7_MAIZE Tubulin beta-7 chain (Beta-7 tubulin). (Maize) {Zea mays}
Link
InterPro Scan - TAIR

AT2G34770.1

Model type
Protein coding
Short Description
fatty acid hydroxylase 1
Curator Summary
encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death.
Computational Description
fatty acid hydroxylase 1 (FAH1); FUNCTIONS IN: fatty acid alpha-hydroxylase activity, catalytic activity; INVOLVED IN: very long-chain fatty acid metabolic process, negative regulation of programmed cell death; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: fatty acid hydroxylase 2 (TAIR:AT4G20870.1); Has 784 Blast hits to 784 proteins in 354 species: Archae - 0; Bacteria - 388; Metazoa - 105; Fungi - 140; Plants - 78; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Link
InterPro Scan - TAIR