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GT13644

CSHL Arabidopsis genetrap mutant lines

Original: GT13644

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT13644

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9081477 [Map]; Strand: c
      • AT2G21190.1 - [+] show detail - ER lumen protein retaining receptor family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT13644 - 3-prime edge 
    AACGGTAGAG GATTTTACCG ACCGTTACCG ACCGTTTTCA TAAATATATG 
    ATCCGTTTTA ACCTCAAAGC TACTTACATG GAGGAAAAAG ACAACTTCGC 
    TCTCTATTAT GTGGTAAGTG AGTCATTCTC GGTTTTGATC TTTTTACTTA 
    GATTCTGTTC ATGCTAGGCA TGTTGGTTAT ATAAGCAGCT TAAAGTCTTT 
    TGTTTTTAGT TAAGCGTACC CTTTAAGGTC AGATGAAGAT GGTGCTTATT 
    AATGTTATTC ATTTGAAGCT TAGTTATAAG TTATAACCAG TGTTCCTTTG 
    TATTTGCCAT CAGTATCAAA TTTATTTTAT CTGCATATTA CATGCCTTTT 
    AGAACATGGT GGCATCTAAC TACTGGTGCA ATAGTTTAAG GATTCATGAA 
    TATTAAGTTT TAGTTCTTTT GGTTTTTTGC AGCTGGCGCC CTGTGTTGTG 
    CTAGCTGTAT GGATTCATCC ATCAACGTCA CACAATATAT TGAATAGAAT 
    ATCCTGGGGA TTCTGTGTTT ACCTCGAAGC TGTTTCAGTA CTGCCACAGT 
    TGAGAGTGAT GCAGAACACA AAGGTATGTG TTTTCTAAGG TTGTTGCTTT 
    CGGAAACTTG AGTACTGAAA AACAAGTGTA ATCCCTGATA TTTTTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9081403 [Map]; Strand: c
      • AT2G21190.1 - [+] show detail - ER lumen protein retaining receptor family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT13644 - 5-prime edge 
    CCTACTTTCT CCCCAGAGAG TTGTTCCCAA AGTAGCCAAG TCCAGAATGG 
    TATGTATATC ATATTCCATT ACAAAACTGC AATAAAGCCT CACAGCTAGA 
    AATATCGCCG TAAGCTCCTG AGATTTCAAT GACAATCCTG CAAATACCCC 
    CCAAAAAAGG TATGTAAATA GACTTTTAAT CTGTAAGAAG AATGCTGATT 
    CAACTAAATC AACTCCTTTG GGAGATTTGG GTACTCAAAA GTTGAATAAA 
    GTTTACATTT TTATATCTCA ACACAGATCG AAATTCTCTA GTTAAAGCTA 
    AGAACCCTAC AGATAACGAA GTCAAAGCAG GAAATGAGGT TATACCAGCA 
    CAAGTCTTCT CCTTCATGAG TTTATAGATA AGAACAGAGA TTCCAATAGA 
    ATGAACAGCT TCGGCGGCAA CGAAGAGATT GTCGTGATCG TGAACGATGA 
    GTTTGAGGAG AACAAGAGCC GCCATGCCAG ATACGACGGC AAGGAAAGCT 
    TTCACCTTTG GAGGCTGCCT CCTCACCCAT GTCGAAACCG CGTGGATCGG 
    AGTCTTCATT TTTCGATTCC TTCTC

AT2G21190.1

Model type
Protein coding
Short Description
ER lumen protein retaining receptor family protein
Computational Description
ER lumen protein retaining receptor family protein; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT4G38790.1); Has 889 Blast hits to 889 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 314; Fungi - 178; Plants - 231; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).
Link
InterPro Scan - TAIR