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GT13647

CSHL Arabidopsis genetrap mutant lines

Original: GT13647

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT13647

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14386011 [Map]; Strand: w
      • AT4G29180.1 - [+] show detail - root hair specific 16
        Distance: 0; Region: exon2 (CDS)
      • AT4G29180.2 - [+] show detail - root hair specific 16
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT13647 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    ACCCACAATC TATGCTGATG AAACCTGGAC CAGAAGAAGG TAAGGGTTTT 
    GATTAATTCT ACAACGTTGA GAAAATTTTC ATCAAAATTC CAATGCAGGT 
    TTAAATTTTA GAACCTAAAG CATTCAATCA TAGAAACAGA CTTGGACCTC 
    ACTTATCATG TCAAACCAAT AATCAGAACA CGGTTTTGGC CAAAATGCAA 
    CCACATATAT CAAAACTTCA AAAATCTTTG GTCTGAAGAT TGCTCATTTT 
    CAAATCAAAA CAGACTCTAA CAGAGGAAAA TAAGCGAGAA TGAGACTCAC 
    GAACCTGCTT GGCCTTGGCC ATGTACTACA ATGGCAATGG CAATGACGGA 
    AAAAAGGATG AGAAAAACAG AGTGAGCTCC CATGTTCTTC TTATTTTGTA 
    AAGCTCAGCT CATCATCGTC AGAAAAACAG ACAACCTGCG TTTAAGATAA 
    CACAAAAACA CAAAAGACTA GAAAGTACAA AGTCTATGCC CATTTCCTCT 
    TCTGGTAGCA ACAAAATTGA CCTGGAGGTG TATAACATAA GTGCTGCTCA 
    CGACTGAAAA AAGCGGCCAA GAAAGAATAT AAAATGGTAA TACAGCTATC 
    AAGAAGTAAC CAGTGGGTCA ACAACTAACG CATGATATAT ATATAACTCC 
    AATAAAATAT TATAACAAAA CATAGCCAAG CTTGGACATA GCCGACAGAT 
    ACAAAGAAAA TAAAAATCTT TTCTGAACAC AGAATTTGTA ACCGAGTTTT 
    GACATTAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14386060 [Map]; Strand: w
      • AT4G29180.1 - [+] show detail - root hair specific 16
        Distance: 0; Region: exon2 (CDS)
      • AT4G29180.2 - [+] show detail - root hair specific 16
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT13647 - 5-prime edge 
    TCCTACTTTC TCCCTAATTG TGGGTCACCC CCTAATATTA ACTATGTAGA 
    CACTGATACT GGTATCAGTT ACACCTGGGA TGCACCTTTC ATCAACGCTG 
    GAGTAAATCT GAACGTCTCT GAAGAATACG GTTACCCGAA AAACCCGGTT 
    TTGCCTTTCC CGCTTGCTGA TGTAAGATCT TTTCCTCAAG GAAACAGGAA 
    CTGTTACACC TTAACCCCCT CCGATGGAAA AGGGAATCTT TATCTCATCA 
    GAGCTTCGTT TATGTATGGA AACTACGATG GTAAAAATGC TTTACCTGAG 
    TTTGATCTCT ACGTAAACGT GAATTTCTGG ACCTCGGTGA AACTCAGAAA 
    TGCTTCTGAG AACGTCATCA AGGAGATCCT CAGCTTTGCA GAGTCAGATA 
    CAATATATGT TTGCCTTGTG AACAAAGGTA AAGGAACTCC TTTTATTTCA 
    GCGTTGGAGC TTCGACCAAT GAACAGCTCC ATCTATGGAA CTGAGTTTGG 
    AAGAAATGTC TCATTGGTAC TCTATCAAAG ATGGGATACA GGATATTTGA 
    ATGGAACAGG ACGGTACCAA AAGGATACAT ATGATCGTAT TTGGTCTCCG 
    TACTCTCCAG TGTCTTGGAA TACAACTATG ACTACTGGGT ATATCGATAT 
    TTTTCAGTCT GGTTATAGGC

AT4G29180.1

Model type
Protein coding
Short Description
root hair specific 16
Computational Description
root hair specific 16 (RHS16); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root hair; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT4G29450.1); Has 136747 Blast hits to 120807 proteins in 4421 species: Archae - 131; Bacteria - 13766; Metazoa - 43367; Fungi - 9914; Plants - 51055; Viruses - 402; Other Eukaryotes - 18112 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G29180.2

Model type
Protein coding
Short Description
root hair specific 16
Computational Description
root hair specific 16 (RHS16); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root hair; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT4G29450.1).
Link
InterPro Scan - TAIR