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GT13659

CSHL Arabidopsis genetrap mutant lines

Original: GT13659

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13659

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 55465 [Map]; Strand: w
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -2016; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 1734; Region: intergenic
    Flanking Genome Sequence: GT13659 - 3-prime edge
    AACGGTAGAG GTATTTTACC GACCGGTACC GACCGTTTTC ATCCCTAAGT 
    ATAGCAATGT TGATATTGTG CGTTAAATGT ATATGTATAT AATTCCAAAT
    TTCTAACAAT TGGTTTATAA ACGATGGCAC TAACATAACC TCATATATTG
    TGATACAACG AAAGGCACCG GATGGTGGAA CGCATCACGC ATCATGCATC
    CTCGATCCCT TTTCAAAGTG GTATGTAAGA GATCATTATT TCAACATAAC
    ATACATTTGC TATGATGACG CATTTTAGTC AAATTAGTTG TTTGTTCAAT
    CATATTAATA AGGGTCAACA GATATTTATA CGAACTGTAA TTAAAATGAT
    AAAATCCAAA GCGACAAGTT TGCTACTACC AAATGTGTGT TTAATATATA
    TAATTTAGAA ACATTGAATT TGAGAAAATG AGTATACGGT TGCACAAAAG
    AAGAAGAAGA AGAGGAGTAT ACCAACAAAA GGTTGTACGT AATATAATTC
    CGACCCCCTA AAAAGATATA TAATAAGGTG GAGAGCGAGG GATCTGAAAT
    TGATGGGTGT GTTTTTGTGT GCATAACAAA AGTTAAAAAT GGATTTATAT
    TATTTTTAAT TTTAAAATTC TTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 81085 [Map]; Strand: w
      • AT4G00190.1 - [+] show detail - pectin methylesterase 38
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT13659 - 5-prime edge
    ACATGTCTGA ATTCGATCTG AGAGCCACCG CCTGATGGTT TTCCGGTCCT 
    GCCGTGTTCC TGATTGTTAT GTCTCGTCCC ACGAAACCGT CCCCCTCAGC
    CACTGTCATG CAATATGTTA CGTGGCAATA AAACGAATAT ATATAGTGTA
    AGTTGTTAAG GAGAAATGTC TAACCAAAAG TGGCAGATTT GTAAGTGGAA
    AATCCTCGGC CCTTGCTTTT GTCACCGGTG ATTATGGTTT TGCCGATACC
    ATCGCCAGTG ATCATGATGT TATTAGACTT GATTCCTACA TTGACATATT
    CCTCGTAAAC GCCTTGCTTG ACATGTATGA CATACCTTGG GCTTCCTTTG
    GGCCTCTCTC CAGCACCATT CACGGCCTCT TGGATAGTTT TGTAGTCCCC
    GGAACCATCT TGAGCCACCA CTACATCCAC TTTTTCACCT ATAGATAGTG
    TTTTCATTGT TATTTTCGAT ATCCCAAACT CCTTACCGTT TTGTTCCATC
    CTCTAAAAAA TACAAAAAAA AATCAAGTAA CAACGAGTGA ATTATTCAAA
    ACATGCTTGA TATTTAAGAT GGTTTTGAGA ATTTTGATTG GTTAGTAATA
    ATGTTAGAGC TACCTTGTTG ATGGCCAAGG TGTTAATGAC ATCAATGGTA
    ATGCTCTCCA AGGAATGAGA CGAGACACCG AGTTCTGACA TCTCTTCCTG
    ACATGTGTCT AGGTTG

AT4G00140.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00190.1

Model type
Protein coding
Short Description
pectin methylesterase 38
Computational Description
pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR