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GT13660

CSHL Arabidopsis genetrap mutant lines

Original: GT13660

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13660

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 285888 [Map]; Strand: c
      • AT4G00695.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis thaliana protein m...
        Distance: 0; Region: exon5 (CDS)
      • AT4G00700.1 - [+] show detail - C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
        Distance: -163; Region: promoter
    Flanking Genome Sequence: GT13660 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACCG 
    TAGAGTAAAA CAGAAAACGA ACTCACAAAG AAAATCTATT AACACTTGTT 
    TTTATTTGCC TTGTTTTTCT AAGAAACTAA GATTTGTTTA TTCGTTTAAC 
    TGGTTTGGTC ACGACAGGTG ATTGATCTTT AAAGGCGAGT TACGTCTTTT 
    TGGTTCTCTT CTTCTGTTTC TGAAGAGGCA AGTTCTCTTT TCCTCCCGTT 
    TTGGTTACTA GCTCTTTCTT GTTCTTGCAA CTCTTATTCA CCTCTTCTTA 
    TAGAAGTCCA TGGTTTTTCG TGTTTCAGAG TTTTCTCTAA CTTAGAAATC 
    TCTTTTCCTC TGCAGTTGTC TCTTCTTGCC TTCTATTGCT GATAAGGTGT 
    TTTGAAAGAA GAAAAAAGCC TCAAATGAGC AATATAAAGC TCGGGGTTGA 
    AGTGATAAGC GCACAGGGTC TGTTACAGAG AGATAAGCAT AACTCATGTA 
    GCCCTTTCGT GGAGCTCAAG TTCGACAACC AGATATTCCG CGCAACGACC 
    AAACACAACG ACCCAAATCC TGTCTGGCAC GAGTGTTTTT ACTTCGTTGT 
    CTCTGACCCT TCCGTCTTGT CAACTCGTAC GCTTGAAGCC CACGTTTACA 
    GCTACCAGAA CGAATTCGAT GCTAAGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 285834 [Map]; Strand: c
      • AT4G00695.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis thaliana protein m...
        Distance: 0; Region: exon5 (CDS)
      • AT4G00700.1 - [+] show detail - C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
        Distance: -217; Region: promoter
    Flanking Genome Sequence: GT13660 - 5-prime edge 
    CCTACTTTCT CCCTGCTCTA CGGTACTTAC TATGTTGAGC ATACCTCTGT 
    TTCCATGGAA ATTGCCGGGT TGCTTTGAGA ACCGCCGTCT GATCTTGACA 
    CGTGTCCCTT TTGTAGCCCA ACTGAGGACC AATCATATGA AGCATTGACC 
    CAAACCAAAG TTTAAACTTA TAAGACGTTT TTTTGTTGGG CCTAATCGTT 
    TGTTAGGCAA TTATTAACGT CAGGTAACGT ATTTCTTGGG TTATAAAAAT 
    CAGAGCATCT CTGTTTTTCT TTTGGACGTT ATAATCAATA TCTGAAGACA 
    TATATTATAA AAATGTCTTA GTTTAATAAA TCATATGTAA CAGATGTATC 
    ATTTTTGAAC AGCTTGTCGC AGTTGAGTGC CAAAAGTTAG CTACCTTTGG 
    AATTTTTAAA ACGAAATTGG AAAAAAACGC CAAATAAAAG TCAAAATAAG 
    AACGTATTAT ATACGTACAG AGAAGACAAA AGCGTCTACT TCAGAGTCTA 
    AAAATCCATG AAAGACTTTG AAGTTTCTTC TTAATAACGA TTAAATCTCG 
    TTTTCTCTTT AATTAGGAGA CGTATCACTT TCGCAACACG TCTCTAGTAG 
    GAATACGTAT AAACAATAAT CTATTAACTT ATC

AT4G00695.3

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80245.3).
Link
InterPro Scan - TAIR

AT4G00700.1

Model type
Protein coding
Short Description
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
Computational Description
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (TAIR:AT4G11610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR