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GT13668

CSHL Arabidopsis genetrap mutant lines

Original: GT13668

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13668

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 190488 [Map]; Strand: c
      • AT4G00430.2 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: -2861; Region: intergenic
      • AT4G00440.1 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: -3391; Region: intergenic
    Flanking Genome Sequence: GT13668 - 3-prime edge
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACATAGA ACAAAGTCAG 
    ACACTAGATT AATTATAGGC CATTTTTTAT TTTAAACCCA CACATTAATA
    ATCGAATTTA TAATGCTAAT CAGAATATTT AGTGATATGT ATCTAGTTTG
    TTAACAACTC TAAGAAACTT CGATATCGGA GATTGGAGAC CGGGGAAGAG
    AGAGTTTATG ACGGAACTTT ATTAAATCCA AAATGTTGTT ACAAAGCGAA
    ATGTAATCAT ACTTGAGCTT ATATACTTAA AGATTAAATG TGAACATTGA
    ACCAAGATCA GGTTAACCAA TAAGCTGAAG TAACCGGTCC ATGTAGTATA
    TACTCAATAA ACTCTACATT CTTTTACTTC ATTTTCT
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 190417 [Map]; Strand: c
      • AT4G00430.2 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: -2790; Region: intergenic
      • AT4G00440.1 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: -3462; Region: intergenic
    Flanking Genome Sequence: GT13668 - 5-prime edge
    CTTTCTCCCT GGTTCTATGT ATATTCTTTT TTACATTCAT AGACCCTTGT 
    TTCTATTCTT AAAAAACTTT ATATGATAAA ACATGCAATG ATCATATCAT
    ACGTCTTATC CAACCAGAAT ACAAGAGTCT TGACATCATT CTCAATGGTT
    TTTCTAAGCG AACCTGAAGT ACACACATCA ATACACGCT

AT4G00430.2

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;4
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational Description
TRANSMEMBRANE PROTEIN C (TMP-C); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00440.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3741)
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1239 Blast hits to 1045 proteins in 162 species: Archae - 0; Bacteria - 74; Metazoa - 262; Fungi - 79; Plants - 239; Viruses - 0; Other Eukaryotes - 585 (source: NCBI BLink).
Link
InterPro Scan - TAIR