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GT13677

CSHL Arabidopsis genetrap mutant lines

Original: GT13677

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13677

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 799220 [Map]; Strand: c
      • AT3G03370.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1...
        Distance: -72; Region: promoter
      • AT3G03370.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -72; Region: promoter
      • AT3G03380.1 - [+] show detail - DegP protease 7
        Distance: -395; Region: promoter
    Flanking Genome Sequence: GT13677 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAAATCTA 
    CGCACTCCTC TCTGAAATCC CCATCGCGTG CAATTGTTTT TGTTTTCTTC 
    TCTTAACCAG TGTAAACCGA AACCAAAATC AATTCTAATT TAAACCTAAC 
    CGAAAAATCA ATTTCAATTT CATATAAGAA CTCCACTATC AAATTAACAA 
    ATCATATAAA CGTAAGTCTT TAAGTATAAT ATTTTTATTA AATCGCGGTA 
    CAAGCCTAGT CAGAATATAC TGTTTTATTT TTTCCAAAAC ATAAATTATA 
    CTATAATTTC ATTTTGTCTT AACAGATATT TAATTTCATT CTATGTGCTA 
    TACTCTAATA CTTAACAACT AATCGGAGCA CTAAGAATAT ACTAATAAAA 
    ATCGCTTAGA AAGGCAAAAC AAATTACTAT CATCAGATTT CTTCCCCAAT 
    CTTCTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 792154 [Map]; Strand: w
      • AT3G03350.2 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: intron2 (CDS)
      • AT3G03350.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: intron2 (CDS)
    2. Chromosome: 3; Position: 799152 [Map]; Strand: c
      • AT3G03370.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1...
        Distance: -4; Region: promoter
      • AT3G03370.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -4; Region: promoter
      • AT3G03380.1 - [+] show detail - DegP protease 7
        Distance: -463; Region: promoter
    Flanking Genome Sequence: GT13677 - 5-prime edge 
    CCTACTTTCT CCAAAAAAGG CATGATTTCC AAGGGGGTAC ACCCACAGAA 
    GTGCTCTCAC GCGCTCAACG CTCACTTTGT GAGAGTGGGG GTGAAATACA 
    GCCTTCTGAT TGGTTGAAAA ACTCTAAAAA AAGTGAAATA GTATACATGT 
    TGCTAGTTCC ATATTAGTTT TTCGTC

AT3G03350.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G03330.1); Has 56644 Blast hits to 56586 proteins in 3128 species: Archae - 370; Bacteria - 40229; Metazoa - 3300; Fungi - 2140; Plants - 1046; Viruses - 2; Other Eukaryotes - 9557 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03350.2

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G03330.1).
Link
InterPro Scan - TAIR

AT3G03370.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1); Has 55 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03370.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1).
Link
InterPro Scan - TAIR

AT3G03380.1

Model type
Protein coding
Short Description
DegP protease 7
Curator Summary
Encodes a putative DegP protease.
Computational Description
DegP protease 7 (DegP7); CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03370.1); Has 8327 Blast hits to 7895 proteins in 2064 species: Archae - 65; Bacteria - 6254; Metazoa - 235; Fungi - 503; Plants - 137; Viruses - 0; Other Eukaryotes - 1133 (source: NCBI BLink).
Link
InterPro Scan - TAIR