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GT13706

CSHL Arabidopsis genetrap mutant lines

Original: GT13706

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13706

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12735809 [Map]; Strand: c
      • AT1G34740.1 - [+] show detail - transposable element gene
        Distance: -7620; Region: intergenic
      • AT1G34750.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 283; Region: intergenic
    Flanking Genome Sequence: GT13706 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACTCGGGC 
    CTGGGAGCGA TATTACAAAT TAATTAATTT CTATTGAATA TTTTTGGTTA 
    TCGATGTATT AGAAATATGT TTTGGTTGTT AATAAATTTT TCAACTATGT 
    TTTTTGAAGA AAAACACAGT TTATTTACCA ATGAAGAATC ACAAATAGTT 
    TTTACAAATT AATTAATTTC TAATAAAATT TTTTCGGTTG AATCTAAATA 
    TATAGGCGAG TATACAGCTA TATGTATACA TTTAATTTAT TAAAGGGAAA 
    AAACAAACAT TGTAAACGAA AAAAAAAAAT CACCGAAAAA AGAGAACTGT 
    TTTTTTTTTT TTTTTTGAAA AAAAAAAAAT TTTTTTAAAA AATTTTTCAA 
    AAAAACCCCC CAAAGTTTTT TTTAACCCCC CCCCCCCCCC CAAAAAAAAA 
    ATCCCCCCGG GGTTTTTTAA CCCCCAAAAG GAAAAA

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT13706 - 5-prime edge 
    CTTTCTCCCT GGGCCCGAGT ATCGAGACAC TCCCGTTGGC CATGATTTCT 
    GACGCCGGTG AAGGTTTGGC TCACCGGCGT CGGGAGCTCT TCGACTCTCT 
    TGCCCTCTTA CGCAATATCT CTATCGCTTT AAGCTTGCTT TTAATCTTTT 
    CTCACTCTTT TCAAAACTTT CACCATTCTT CCCAAAACCT TTTTCAAGCC 
    ACAAGTTTCA ACGAAATCTT AATTGATAGT GACAGAAGAT GGAGGAGTTC 
    TCCGGTGACT CTTTTCCAGT TTGCTCTGTC CACAATTCCT TTGGTGCCTC 
    CTCTCCTCCC AAATCCATCT CAAAGCTGCA AATCTGAATT TTTTGAACAG 
    CAACTGGATT TTCCTACCAC CAACCATTCT CCAGCCATAA CGACTCCGTG 
    TGGCATGCCT AGCTCGGCAA GTGCCTCATC GCCGATCCCA TGGTCTTTCA 
    TGCGTAGCCG CCGCACTCTT CCCATCCCTT ACCCTGCTGA GGAGAAATTA 
    GGTTTCTTTC TATTGGGCAT GTGGTCAACT TTAGGCCCAT TATCCAAGTC 
    CCGGCCCATT CTTAAAAGCA AAGGCCCAAA CCCTAAAAAA GAGTGGCCCA 
    GGTCTGTTCT CCCAATTTTC TGTNCCCACC GCCTTACTAT TTGCTGCATC 
    GTTTCTCTGC TCTCTTTGGC CATGGACTCC AATCGAGACG TGAATTGATT 
    ATCCTAAGGT ATGGTTTTTG TCACCTTAAA ACC

AT1G34740.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G05280.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G42730.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653); contains InterPro domain Tetracyclin repressor-like, C-terminal; (InterPro:IPR011075)
Link
InterPro Scan - TAIR

AT1G34750.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: phytochrome-associated protein phosphatase type 2C (TAIR:AT1G22280.1); Has 7616 Blast hits to 7609 proteins in 922 species: Archae - 14; Bacteria - 1457; Metazoa - 1483; Fungi - 777; Plants - 2623; Viruses - 11; Other Eukaryotes - 1251 (source: NCBI BLink).
Link
InterPro Scan - TAIR