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GT13716

CSHL Arabidopsis genetrap mutant lines

Original: GT13716

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13716

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8311728 [Map]; Strand: w
      • AT1G23390.1 - [+] show detail - Kelch repeat-containing F-box family protein
        Distance: -1079; Region: intergenic
      • AT1G23400.1 - [+] show detail - RNA-binding CRS1 / YhbY (CRM) domain-containing protein
        Distance: 348; Region: intergenic
    Flanking Genome Sequence: GT13716 - 3-prime edge 
    AATGAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TAAACTTCCG GTTGGGTCAA TAAAGACATT AATTCCTTCC GAAATTAAAA 
    CAAAAGATTA TAAGCAAGCA GGATCTTCTA TATACTATTA CATAATAAGA 
    GGACCCCTTT GGAAAACTGT CTCTAATATT G

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8311801 [Map]; Strand: w
      • AT1G23390.1 - [+] show detail - Kelch repeat-containing F-box family protein
        Distance: -1152; Region: intergenic
      • AT1G23400.1 - [+] show detail - RNA-binding CRS1 / YhbY (CRM) domain-containing protein
        Distance: 275; Region: intergenic
    Flanking Genome Sequence: GT13716 - 5-prime edge 
    AAAATCAAAA CCAGGACCAT TTGCAACTTC CCCCAAGGAC CTTATCCTAC 
    TCTCACTCTG AGGCTCCAAG TTCTCTATTT AACGTACAGA TAAGGAGATA 
    TAAAGAACAA TGTGTATAAA CCACAAATGA CTACAGGAGA AAGATATTTA 
    CGCAAAAAGA AAAATAACAG TAAAATAATA TTTGATTAAA CCTATAAATC 
    TACTCATAAC CT

AT1G23390.1

Model type
Protein coding
Short Description
Kelch repeat-containing F-box family protein
Computational Description
Kelch repeat-containing F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G24760.1); Has 146 Blast hits to 146 proteins in 15 species: Archae - 0; Bacteria - 1; Metazoa - 1; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G23400.1

Model type
Protein coding
Short Description
RNA-binding CRS1 / YhbY (CRM) domain-containing protein
Curator Summary
Promotes the splicing of chloroplast group II introns.
Computational Description
CAF2; FUNCTIONS IN: RNA binding; INVOLVED IN: Group II intron splicing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain-containing protein (TAIR:AT2G20020.1); Has 265 Blast hits to 223 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 261; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR