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GT13719

CSHL Arabidopsis genetrap mutant lines

Original: GT13719

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13719

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5526 [Map]; Strand: c
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon16 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon15 (CDS)
    Flanking Genome Sequence: GT13719 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACTT 
    TCACCTAAAC CAGCGTCTTC CAGAGTTTCT GCCACTGATT TTTCCTTCCG 
    CATTTGCTGG GCTGCCTGAG GTTCAGATTG AAGCAGTTAA TTACTGTAAT 
    CAATATATCA AGAAAAGGAA ATTACTATTC TACCTCAAAT TTTGCTTTAT 
    ATGTAGTGAA AGATCTCAAC TGCTCTGGGC TCATTTCTGC CATAAGAAAT 
    TCAGGTTCAG CAGCCGTCTC TAACAGCTTA AAGATCTTGG CTCCTTCTTC 
    GCTGTCAGTG ACGTTCTGGC TGTGAACACC ATTAATTCCT CTCTGGTACT 
    CACACATAAT ACCCTCAACA AGAGCTGAGC GCCTACGGAA AATAGAAAGA 
    AAAAAAAAAG GCAAGTTTGA ATGAAAATAA CCCATGACAA ACTGCAATCT 
    TTGGTTCTTT TGTTGGGAAA ACCTTCCATA ATCAAAAGGC CAAAAGCTTT 
    TCAAAAAAAA ACAAAAATGG TCTGTCCCAA AAACTACTTA AAAACCTAAA 
    ATTGTTGAAT GAAACAAAAG GCCCCTAGCT TAAAGGAGTA AACCTGACCC 
    TTCTAAAAAA AAGAGGCAGG GGCTAAATTG ATCCCATAAA GGTACCTAAA 
    AAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23399589 [Map]; Strand: c
      • AT3G63350.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13719 - 5-prime edge 
    CCTACTTTAT CCCTGGATCC CACACGACAA AACTGATGCC TCCCCTGTTC 
    CAAGACACAA TGTGGTTTGT GTTTGGATCA CCAACCATCT CGAACGTCTT 
    TGTTAGAAAA GGAGAAGGCC CTGCTTCCTG CAATCCCTCC ATAGGCACCG 
    GCGGTGGCAT TGACCGTGCT CTGGAGCTTG ACGACGGGTC CATCTTGTTA 
    GCAATGCTAA TGCTAGAAGT CTAATGATCT ATGATTGGAT TTTTCGTAAA 
    TTATAATCCA AGGAAGGAAA CGATGCATTT GGGGTTCCTG TATTGGAGAA 
    GACCAAAACA GCACAGAACC AAAAGAAGAA AGAGCGGGAA GTGTATTTTT 
    TTCTTTAAAA CAGAGTACTC TGCTTTTGCT GGTGGTTAGT TACTTAGTTT 
    ATGGCAGTTG GGGCAGGAAA TGTGGCGAAG ACAATGGCCA CGTAGGTGAC 
    TTAAATCCAT ATATATATAT AGGGGGGAGC TGGAGATCCT TAAAATTCTT 
    TTACCC

AT3G63350.1

Model type
Protein coding
Short Description
winged-helix DNA-binding transcription factor family protein
Curator Summary
member of Heat Stress Transcription Factor (Hsf) family
Computational Description
AT-HSFA7B; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to high light intensity, response to heat, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root, pedicel, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock transcription factor A7A (TAIR:AT3G51910.1); Has 2113 Blast hits to 2100 proteins in 228 species: Archae - 0; Bacteria - 6; Metazoa - 325; Fungi - 481; Plants - 785; Viruses - 0; Other Eukaryotes - 516 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR