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GT13730

CSHL Arabidopsis genetrap mutant lines

Original: GT13730

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13730

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT13730 - 3-prime edge
    ATTTTCCAAA AAATTTGGAG
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 269448 [Map]; Strand: w
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13730 - 3-prime edge
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC CCCCTCCGGT 
    TTATTCGACG TCTCCGGTAC AATCTCCTGA GACGGTTGGC TCACAGTGAC
    GGTGGTTTCT ACAGATACAT TGTTCCGCGG AGGCGATAAC ATCGGCTGAT
    GGAAATTATT GTTCCGCGCG GCGAGGACAA CGCCGTTACT CTCGAGTTTG
    GAATCAATTG CGTTTTCGAT TGACTCGATG TGCTTCTGAA TATCATCGAA
    TTGGCGTTTG AATGTTTCCA CTGCAACTGA AAACGCAGCT AATTCGTCTA
    TGGATTTCAA AAATTGAGGC TGCTTAGATT GACCGATCGT AATGTCCATA
    CTTGTAGACT CTGTTTCGAC AATCTTCGGT AATTCTCTTC AT

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR