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GT13742

CSHL Arabidopsis genetrap mutant lines

Original: GT13742

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13742

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17762000 [Map]; Strand: c
      • AT3G48100.1 - [+] show detail - response regulator 5
        Distance: -1126; Region: intergenic
      • AT3G48110.1 - [+] show detail - glycine-tRNA ligases
        Distance: -1001; Region: intergenic
    Flanking Genome Sequence: GT13742 - 3-prime edge 
    CTTACTATAT ATGTCAAATT TTGGTTTGGC TTGCAGAGAA ACGGCTCCGG 
    ATTTCTCCAT GATGGGTTGT TTATCAGTAT GTATATGCGT GTCCCTTCAG 
    AGTAAGTC

AT3G48100.1

Model type
Protein coding
Short Description
response regulator 5
Curator Summary
Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay.
Computational Description
response regulator 5 (RR5); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 6 (TAIR:AT5G62920.1); Has 45766 Blast hits to 45301 proteins in 2636 species: Archae - 240; Bacteria - 40380; Metazoa - 18; Fungi - 471; Plants - 1420; Viruses - 2; Other Eukaryotes - 3235 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G48110.1

Model type
Protein coding
Short Description
glycine-tRNA ligases
Curator Summary
glycine-tRNA ligase
Computational Description
EMBRYO-DEFECTIVE-DEVELOPMENT 1 (EDD1); FUNCTIONS IN: glycine-tRNA ligase activity; INVOLVED IN: regulation of embryonic development, glycyl-tRNA aminoacylation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal (InterPro:IPR002311), Glycyl-tRNA synthetase, class II, heterodimeric (InterPro:IPR006194), Glycyl-tRNA synthetase, class IIc, beta subunit (InterPro:IPR015944), Glycyl-tRNA synthetase, class IIc, alpha subunit (InterPro:IPR002310); Has 11308 Blast hits to 11293 proteins in 1754 species: Archae - 4; Bacteria - 6864; Metazoa - 4; Fungi - 1; Plants - 40; Viruses - 0; Other Eukaryotes - 4395 (source: NCBI BLink).
Link
InterPro Scan - TAIR