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GT13765

CSHL Arabidopsis genetrap mutant lines

Original: GT13765

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13765

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 149281 [Map]; Strand: c
      • AT2G01280.1 - [+] show detail - Cyclin/Brf1-like TBP-binding protein
        Distance: 0; Region: exon17 (3UTR)
      • AT2G01290.1 - [+] show detail - ribose-5-phosphate isomerase 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13765 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAAC 
    TCCCGGTAGC CTCAGAATCG CATCACTCAC TGCTCCCAAA TCTCCCATAT 
    CCTCTTCCAC ATGCATATCC ACTATGTAAT TCCCATTGTC TGTCACAAAG 
    GCCTTCCCTT TCTCTCCCAA ACGAAGATTC GCTTCACACC CGTATCCTTC 
    CAGCAGACTC CGGAGCTTCT CCGCCGTGAA TTTCCAGCAA AAGGGCACTA 
    TCTCCACCGG AAGAGCAAGC TTGCTTCCAC CAATATGCTT CACCATCTTG 
    GACTCGTCAA CAATCACCAC AAACTTCTTA GAAGCTCCTT CGATCATCTT 
    CTCTCGAAGC AGAGACCCTC CTCTGCCTTT CACCAGGTTG AGAAAAGGGT 
    CGACCTCGTC TGCGCCGTCG ATGGAGAGAT CGATGACAGG GTGTGCGTCG 
    AGATCAGAGA GAGGGATGCC GAGAGACAGA GCCTGCTCCT GCGTCTTCTT 
    AGACGTTGGT ATACCAACGA TGTTCTCGAG TTTGCCTTGA CGGAGAAGCT 
    CGCCGATTCG GTCGACGGCG TGTTTGGCGG TGGAGCCGGT TCCGAGACCG 
    AGAACTATGC CGGACTCGAC GAATTCCACG GCTTTGTAAG CGGCGATACG 
    TTTGAGCTCG TCTTGTGTTA AATTCATGGG CTGAGGCGGT GAAGAGGCAA 
    CATCAAAGGC GGAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 149189 [Map]; Strand: c
      • AT2G01280.1 - [+] show detail - Cyclin/Brf1-like TBP-binding protein
        Distance: 0; Region: exon17 (3UTR)
      • AT2G01290.1 - [+] show detail - ribose-5-phosphate isomerase 2
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: GT13765 - 5-prime edge 
    TTTCTGGATA TGGCTTCTAC TGTTATCATT GCAGGTGAGC TTGGTGTTAA 
    GATCAAGAAC AAACACTGAA ACACACACCA CACCTCTTCT CGTTGATTTT 
    GGCCTTTATG TATTAGGAGA CAGAGGATTA TGGTTTGCTC TATGGTTTAG 
    ATGATATGAG ATTAGGTTTT GGATGATGTC ACTGTGAGGA GGATGAATGA 
    CTTTCTTTTG ACAGAGTTTT GGATGCATTG ACATCGTCGT CATCATCATC 
    AATCAATCTT GTAAACAGCA TTTTGCTTCT TCATTGCCTT TGTTGTGTTT 
    GAATGCTCTT CTTTTACTAC TGGGCCTGTG TTGGGCTTTG CTCCTTGTTA 
    TATATCATCA TAGGCACACT AAACACTAAA ACTATTGTTT CGCCGAAACA 
    TGAATCGTGT TAGGTGTGAA TCCATGTTGT GACAAAACTA AAACTATCGA 
    CCTCGCAGTG AATAGTAATA GTATGATTAA TACAATCCAA AATCATAACC 
    ATTCTCTTCC TCTTCCACTT CGTCTTCATA GAAGTTCTCA TCTGCGTGTG 
    GTGCTGCGTA GTCTTCTTCA TCTTTCAACA TCTTCTTCAT CTTCAACAAT 
    CTCATGCTCT T

AT2G01280.1

Model type
Protein coding
Short Description
Cyclin/Brf1-like TBP-binding protein
Computational Description
maternal effect embryo arrest 65 (MEE65); FUNCTIONS IN: RNA polymerase II transcription factor activity, cation:chloride symporter activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670), Brf1-like TBP-binding (InterPro:IPR011665); BEST Arabidopsis thaliana protein match is: Cyclin/Brf1-like TBP-binding protein (TAIR:AT3G09360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01290.1

Model type
Protein coding
Short Description
ribose-5-phosphate isomerase 2
Curator Summary
Cytosolic ribose-5-phosphate isomerase. Knockout mutation causes chloroplast dysfunction, late flowering and premature cell death.
Computational Description
ribose-5-phosphate isomerase 2 (RPI2); CONTAINS InterPro DOMAIN/s: Ribose-5-phosphate isomerase, type A, subgroup (InterPro:IPR020672), Ribose 5-phosphate isomerase, type A (InterPro:IPR004788); BEST Arabidopsis thaliana protein match is: Ribose 5-phosphate isomerase, type A protein (TAIR:AT1G71100.1); Has 5035 Blast hits to 5035 proteins in 1937 species: Archae - 235; Bacteria - 3542; Metazoa - 112; Fungi - 145; Plants - 141; Viruses - 0; Other Eukaryotes - 860 (source: NCBI BLink).
Link
InterPro Scan - TAIR