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GT13766

CSHL Arabidopsis genetrap mutant lines

Original: GT13766

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13766

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14162183 [Map]; Strand: c
      • AT2G33420.1 - [+] show detail - Protein of unknown function (DUF810)
        Distance: 0; Region: exon6 (CDS)
      • AT2G33430.1 - [+] show detail - differentiation and greening-like 1
        Distance: -484; Region: promoter
    Flanking Genome Sequence: GT13766 - 3-prime edge 
    GTAGAGGTTT TTACCGACCG TTACCGACCG TTTTCATCCC TGGCTATGCC 
    TCCAACTACA GGACGGTGGA ACCGGTCTGA TCCAAACACG ATCTTGAGGG 
    TACTTTGTCA TAGAAACGAC CGTGTTGCTA ATCAGTTTTT AAAGAAATCG 
    TTTCAATTGC CTAAACGAAG GTGAACAGGT AAGAAGTAAG AAAGGAAAAA 
    AGAAAAATTC AACAAAAAAA TATGTTGGTG TTGGTGAAGG ATGTGAACTT 
    GATTCGTTGT GTAAATGGGT TAAAAGTATG GTTTTCGAGT TTTTGGGGCT 
    GATTTGTAAT CTAAAAATTG TTGCATTGAG GTTGAAGAGA ATTGTTTGTT 
    GTTTTACGAG GAAAATATTC GTTAATTCTT TAATTAGATG TGTTCAGAAA 
    TAGAAAGTCT TTATTTGTTT AAGAAATTGT AACAAGTTCT TGCGATGATG 
    AAAAGAATGA GATTTAATGG GCTTTGAGCC CAACTCATGT AAAGCCTTTA 
    TAGTATATAA GAAGATAAAA ATTCGAAGAT AAAAACCAAA ACCCTATCCA 
    CTTTACTCTA AACCTCCATT ACCTTCGTCT TTCTTCCTCA GTCGCCCTAC 
    AATGGCTTTG CCTTTGTCTG GGACGCGCCA CCTCACGCGC GCTCTCCTCT 
    CTAATGTCAC TCTTATGGCT CCTCCTCGGA TTCCTTCCTC TGTTCACTAC 
    GGTGGATCTC GGTAGGTTTG TTCG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14162121 [Map]; Strand: c
      • AT2G33420.1 - [+] show detail - Protein of unknown function (DUF810)
        Distance: 0; Region: exon6 (CDS)
      • AT2G33430.1 - [+] show detail - differentiation and greening-like 1
        Distance: -546; Region: promoter
    Flanking Genome Sequence: GT13766 - 5-prime edge 
    CCTACTTTCT CCCGCATAGG TAGCTTCTGT CCAGAACCAA CCATCCCCAT 
    TCCACTTGTC TCACACGTTA CAATACTAAA ATCTTCCATA AGTTGTTCTG 
    TTGGTTGACT CATAAGCTGA ATCACTCCTT CCACTGTCTC TGCCTCTCTG 
    TCCACCACTT CTTCAGGTAT CAACCCTTCA CCACAAGTAC AAAAGACCCT 
    TTTCAAGTTC TCGAAATCTT CTTCGATAAT ACTGTGATCC GATCTATAGA 
    ACACTCGGGA GTATCCACCG GCGAGAAGGA CCATCAAGAA CGCTTCGAAT 
    GATGATTTCA TAACCTCCCT CATTGCTAAT GATTGAGCTC TATCCGCAAG 
    AATCGCTGAC ATCAATGTTA AGTTCTGTTT CATGATTCGT AACGCTGGTC 
    TGATCCTCGC GTTCGCAACT TCTCCTACGT AGAGGCTCTC GTACAAAACA 
    GAGTTTGAAT CGAGGAAAAT CAAACGGTAA GCCGCGACCT CTGAAACGTG 
    TTGGCAAGCG GATTCGATTC CAGCGTATGT GAAATCGAAA TAAGAAGATG 
    AATTGTTGTT TCTATGGCGG TAACGTTTTC GAGTTGCCGG AAGTATCCTC 
    GGGTTTAAAG AGAGTGTTTT GTTTAAGGAG TGGATATGTG AGCTTAGGAA 
    ATGTAATGTG TTGAGACGAA TGTATAGACG TTGTGTCCCG CGGCTTGTGG 
    ATGGCCGTGG ATGGTGGCCG TCGGATATGA CAGATGTGGT GTATTTAAG

AT2G33420.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF810)
Computational Description
CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Mammalian uncoordinated homology 13, domain 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF810) (TAIR:AT1G04470.1); Has 196 Blast hits to 182 proteins in 26 species: Archae - 0; Bacteria - 2; Metazoa - 13; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G33430.1

Model type
Protein coding
Short Description
differentiation and greening-like 1
Computational Description
differentiation and greening-like 1 (DAL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: plastid organization, endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA); LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: plastid developmental protein DAG, putative (TAIR:AT1G32580.1); Has 251 Blast hits to 228 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 251; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR