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GT13798

CSHL Arabidopsis genetrap mutant lines

Original: GT13798

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT13798

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 187614 [Map]; Strand: w
      • AT4G00430.1 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: 0; Region: exon1 (5UTR)
      • AT4G00430.2 - [+] show detail - plasma membrane intrinsic protein 1;4
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT13798 - 3-prime edge 
    ACGGTAGAGG TTTTTACCGA CCGTTACCGA CCGTTTTCAT CCCACCACAC 
    ACTAGGTAGC TACACACGAG AAAGAAAAAG CTCACAACTT TAACCTTTCT 
    GGAGAGAGAA GAACAAAAGA GGGAGAGGGA GAGAAATGGA AGGCAAAGAA 
    GAAGATGTAC GAGTGGGAGC TAACAAGTTC CCGGAGAGGC AACCCATCGG 
    TACATCGGCT CAGTCCACCG ACAAGGACTA CAAAGAGCCA CCTCCTGCGC 
    CACTGTTCGA GCCCGGCGAG CTCAGCTCAT GGTCTTTCTA CAGAGCCGGA 
    ATAGCTGAGT TTATCGCTAC TTTCTTGTTT CTCTACATCA CTGTTTTGAC 
    TGTAATGGGA GTTAAGAGAG CACCAAACAT GTGTGCTTCT GTTGGAATCC 
    AAGGTATCGC TTGGGCTTTT GGTGGCATGA TCTTTGCTCT TGTCTACTGT 
    ACTGCTGGAA TTTCAGGTAA CCTTCTCTCG ATTTTCCCAT TTTTCTGTAA 
    TCTCTGTTTT GGTGGGTTCT CTGTTTTGGT TCTGCTTTAT TTGCTCTGTT 
    TTGTTTCTGA AAACCATTAT GTGAGTCCTC TGTTTT

AT4G00430.1

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;4
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational Description
plasma membrane intrinsic protein 1;4 (PIP1;4); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.1); Has 10702 Blast hits to 10683 proteins in 2216 species: Archae - 88; Bacteria - 5147; Metazoa - 1472; Fungi - 442; Plants - 2512; Viruses - 2; Other Eukaryotes - 1039 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00430.2

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;4
Curator Summary
a member of the plasma membrane intrinsic protein subfamily PIP1.
Computational Description
TRANSMEMBRANE PROTEIN C (TMP-C); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR