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GT13801

CSHL Arabidopsis genetrap mutant lines

Original: GT13801

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13801

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30305653 [Map]; Strand: w
      • AT1G80620.1 - [+] show detail - S15/NS1, RNA-binding protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13801 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TACTGGTTAC CGGAAAGCGA 
    ATTCTGAGGT TTGGCATCGA ATCTGACGAA CTGTCTCTTC CCGTCCTGAG 
    ACTGAGTCTG TTTGAGACTG CTTCTGATAC CACTGAAGTG GGAAGAGATT 
    TTATAAGCCG ACAATGATGG AGAGGGGTGT TCATTAGATT CGTTCCCGAC 
    TTGAGGTGAT GATGAGGAGG AGGAGGAGGA GGAGGTTGAG AAAAGGTGAA 
    TGGGAGATGG ATTCGAATGT GGCCCTTGTT TTGGTCTGGA GAGATGAACC 
    GCCATGGAAA CTGATCGTGG GGGCTGCGGG AGCTTTTGAG GTTTGTGGCG 
    GGGACGTGTT GAT

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT13801 - 5-prime edge 
    ATTTATTAGA TGGTAATATA TTTG

AT1G80620.1

Model type
Protein coding
Short Description
S15/NS1, RNA-binding protein
Computational Description
S15/NS1, RNA-binding protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, ribosome, intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15 (InterPro:IPR000589), Ribosomal protein S15, bacterial-type (InterPro:IPR005290), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: S15/NS1, RNA-binding protein (TAIR:AT1G15810.1); Has 7972 Blast hits to 7972 proteins in 2715 species: Archae - 0; Bacteria - 5433; Metazoa - 85; Fungi - 116; Plants - 310; Viruses - 0; Other Eukaryotes - 2028 (source: NCBI BLink).
Link
InterPro Scan - TAIR