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GT13803

CSHL Arabidopsis genetrap mutant lines

Original: GT13803

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13803

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19541172 [Map]; Strand: w
      • AT2G47650.1 - [+] show detail - UDP-xylose synthase 4
        Distance: 0; Region: exon1 (CDS)
      • AT2G47650.2 - [+] show detail - UDP-xylose synthase 4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13803 - 5-prime edge 
    ATACGATGAC TCCGATCGCA TTCCGTATCC GGAAAGCGGA TCCCCGTCGT 
    AAGGAATTGG TTGGTGGTTG GATGATTTGG AGAAGATTGT GAATCCTAAT 
    GTGGCGATGG CAATGCCGAC GAGGACGAAG ACGAGTCTCT GTTCTCTGAG 
    CATGTAACGG ATCGGACGAA TCGCTACGAA CCATGGCTTT ATCGGCTTTG 
    GATAATAAGA TTCCGCTTCT GGTTGCTCTA TCTCGTGTCG CCGGTTTGTC 
    AGCTCAGACG CCATCTTTCA GAGTTTCTGG ATCCACGATC GTGATAAATG 
    GAAGGAGAAA GTAATCGTGA TTTTACCGAG TCGAACTAGC CGGAGACTGA 
    GTCGACCTGT AGGACGGGGA GTGAAAACCG ATTTGGGTTT TCGCTTGTAT 
    TTAAGTAGAC GAAGGTGCGT TACTGTTTTA GCCTCGTTCT TCTTCTTTTA 
    TTACGATGAT GCCCCTATAT TTACTTTGTT TCTCTCTCTC TT

AT2G47650.1

Model type
Protein coding
Short Description
UDP-xylose synthase 4
Curator Summary
encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational Description
UDP-xylose synthase 4 (UXS4); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: nucleotide-sugar metabolic process, D-xylose metabolic process; LOCATED IN: Golgi apparatus, plasma membrane, vacuole, membrane; EXPRESSED IN: cotyledon, male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2); Has 44652 Blast hits to 44610 proteins in 2978 species: Archae - 851; Bacteria - 26010; Metazoa - 746; Fungi - 333; Plants - 1297; Viruses - 49; Other Eukaryotes - 15366 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47650.2

Model type
Protein coding
Short Description
UDP-xylose synthase 4
Curator Summary
encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational Description
UDP-xylose synthase 4 (UXS4); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2).
Link
InterPro Scan - TAIR