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GT13826

CSHL Arabidopsis genetrap mutant lines

Original: GT13826

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13826

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23450034 [Map]; Strand: c
      • AT3G63500.1 - [+] show detail - Protein of unknown function (DUF1423)
        Distance: 0; Region: intron1 (5UTR)
      • AT3G63500.2 - [+] show detail - Protein of unknown function (DUF1423)
        Distance: 0; Region: intron1 (5UTR)
      • AT3G63510.1 - [+] show detail - FMN-linked oxidoreductases superfamily protein
        Distance: -502; Region: promoter
      • AT3G63510.2 - [+] show detail - FMN-linked oxidoreductases superfamily protein
        Distance: -502; Region: promoter
    Flanking Genome Sequence: GT13826 - 5-prime edge 
    TCTTTTCTCC CTGACTCTCT TCTATTTTGT TTCCCTTCTC CTCTTGTGCG 
    TTTTGCTGCA ATTTCCGATC CTCATAAACC CTAGCTTTCT GACGCATATT 
    CAGCAACTAA AACGATGAAG AGACTAAGAT CCAGCGACGA CCTTGATTTC 
    TGTAATGATA AGAATGTTGA CGGAGAACCT CCCAACTCGG ACCGTCCGAC 
    CTCTTCCTCC CACCGGGGCT T

AT3G63500.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1423)
Computational Description
Protein of unknown function (DUF1423); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1423) (TAIR:AT1G14740.1); Has 795 Blast hits to 695 proteins in 144 species: Archae - 6; Bacteria - 39; Metazoa - 207; Fungi - 61; Plants - 263; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63500.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF1423)
Computational Description
Protein of unknown function (DUF1423); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1423) (TAIR:AT1G14740.1); Has 3195 Blast hits to 2635 proteins in 392 species: Archae - 10; Bacteria - 381; Metazoa - 1310; Fungi - 308; Plants - 351; Viruses - 11; Other Eukaryotes - 824 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63510.1

Model type
Protein coding
Short Description
FMN-linked oxidoreductases superfamily protein
Computational Description
FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G47970.2); Has 11920 Blast hits to 11916 proteins in 2583 species: Archae - 58; Bacteria - 8071; Metazoa - 278; Fungi - 218; Plants - 160; Viruses - 0; Other Eukaryotes - 3135 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63510.2

Model type
Protein coding
Short Description
FMN-linked oxidoreductases superfamily protein
Computational Description
FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G47970.2); Has 11664 Blast hits to 11660 proteins in 2553 species: Archae - 58; Bacteria - 8007; Metazoa - 234; Fungi - 152; Plants - 146; Viruses - 0; Other Eukaryotes - 3067 (source: NCBI BLink).
Link
InterPro Scan - TAIR