1. Home
  2. Mutant Lines
  3. GT13828

GT13828

CSHL Arabidopsis genetrap mutant lines

Original: GT13828

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13828

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 240390 [Map]; Strand: c
      • AT1G01660.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: GT13828 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAAATATG AGGGAGGCTG 
    GCGTGTAACG GAATCCTCAT CGGAGAATCC AGAAGGAGTT CCATGGCGAC 
    GAGTGTAACT CTGAAGGAGT AATAGAATCT CCGAACAGAC TGAGCTCGCT 
    GCGTCTTTCT CAGCCGCCAC CTTGCTGAGT TCTTCCTCTG TTCCTTTTCT 
    ACGTCTTGCT TCTTCTTCAT ACAACCTCAT GAAGTTTTGT CCTACAGAGC 
    AAGCTTCTTC CTTCTCCTTC TTCACTTTCT CTAGCTCCTC TCTTCTCNTN 
    CNACACTCGA CAATCCTCTG CCTCTTTCCT CTGCCTCACC TGTCAAAACG 
    ATCTTTTAAT ATATGATGAA AGTAACTTCT AGTTTCTAAA TTAAATCTAA 
    GATTGATCAC CTCGTCTTCA TATAGCTGCA TCAAGTTCTT GCTTATCATG 
    CACGCTTCTT CCTTCTCCTT CTTTGTCTTC TCAAGCTCTT CCTCTTGTCT 
    CTTCATAGAT TCCTCCATCT CTTTCCTATG TCTCAGCTGC TCGTTGTACA 
    GCTGCATACC TAATTTGTAC AAATTCAAAT GAAATCTCTA ATTGTCTGAG 
    AAGAAATATT CACTTCTGTT TCTGACAGTA CCATCCTGAA CAATGGCTCG 
    CACTTCTTCG ATCTCCTTCT TAGATCTCT

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT13828 - 5-prime edge 
    AGAGAAAGGA TCTATGATGG TCACGAGACC TGACCTATGA GATACCCGAA 
    GCTCGACCCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 240143 [Map]; Strand: c
      • AT1G01660.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon10 (CDS)
    Flanking Genome Sequence: GT13828 - 5-prime edge 
    CCTATGGTTT CACCTATTAA GCTGAATCTA CAAGAGAAAG GCTCGATAAT 
    GGTCACGAGA CCTCACCAAT GACATACCTG AAGCTCGCCC ACTGCAACCT 
    TGTCCCTAAT CACGCCCTTC GTTCCGCG

AT1G01660.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1); Has 73160 Blast hits to 42540 proteins in 2253 species: Archae - 866; Bacteria - 9091; Metazoa - 34168; Fungi - 4977; Plants - 4797; Viruses - 224; Other Eukaryotes - 19037 (source: NCBI BLink).
Link
InterPro Scan - TAIR