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GT13830

CSHL Arabidopsis genetrap mutant lines

Original: GT13830

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13830

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18796192 [Map]; Strand: w
      • AT2G45630.1 - [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G45630.2 - [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13830 - 3-prime edge 
    AACGGTAGAG GTTTATAGCT AGGGGCTATA ATGGCGGAGA TGGAGTCAGA 
    GTGATAGGCC AAGAATTCAG GAAGAGGAAG CGGAGACTCG AAGGCTTTGA 
    GGATCTCGAA CTTGGTGGAG GCGACGAATC CGTCGCCTAA CACAGCCATG 
    GCGTCGGGAC GTTTGACGAT GAGGACACGT GGCAGTTTCT CGGTGGAAGA 
    GCTCGTCGCC ATCGTTGCGA CTTGCGAGAT TGATCTGTTT TGCATTATTA 
    TTAAAAAATT GTTTTCAAAA TTATCTCACT TCTTTTTTCA AGTCACGCAA 
    ATAACACGAC ACGTTTAAGA AATCCACCCA CATCACCATC ATACAAAAAT 
    CTTCAAAACT AAGACCTTTC TTTTTGTTGG GTCACAAGCA AGATTTCAAA 
    TCACAACCAA AAAAGCAAAA AGAACAGAGC ATGAATCTTC TACCCATAAA 
    TATATACAAG CCACACGAAT CCGCGATTCA AATGTTTTAA AAGTTCAGTT 
    GTGGCCTTGT CCATTATTAT CTTCAGGAAC ATATGGTTCC AAAAGCTTGG 
    CACATGGGTT AGGATCTTGA TGCATAATCC TTGCAGCTCT TTCGAACTCT 
    TCCCTCAACA CTCTGATACT AAACTTGTCG ACCACCCGAC CCAGATCATG 
    GCTCGTCTCA AACGGATCCT CTATGCATAT CAAGTGCCTA TCGTTCCCCA 
    CCCTTCTCGT CCAGTCCTTC TCTCGCTTCC TGCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 654736 [Map]; Strand: c
      • AT4G01516.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 4779; Region: intergenic
      • AT4G01520.1 - [+] show detail - NAC domain containing protein 67
        Distance: 1671; Region: intergenic
    Flanking Genome Sequence: GT13830 - 5-prime edge 
    CCTGATCGTA GTTAGATCCC TTCAAAAGAG GATGAGAGAT CACCGCTCCG 
    GGATTGTCAG CCGAGGTCAA GTCATAAGGT GAGATGGTTC TTCTCACCTC 
    CACAGTTGCA TTAGCACCAG TCTCTGTCGC CATTGATTCT TCACGAGTTC 
    AATTAGAAAA TTTCAGAAAA TATAGATTCA AGCTCTGATA CCATAAAGAG 
    AGAGTCAGAG GCTGAGAATT TCTGTGTATT AAGAAATAGT TCGCGAGCGT 
    ACATATATAG CTAACTCTAA ACAAGAATCT GAAATCTAGG TACAATCTAA 
    CTAGTTACAA CAATCTTTGC CTTTGTTACG GAGTTGATCG CAACCTTCGA 
    ATATTTGCAG TATCTGTGGA ATATGCTGAA TTTGAGTAAA CCAACTTGAA 
    CCAAAC

AT2G45630.1

Model type
Protein coding
Short Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Computational Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: NAD or NADH binding, binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1); Has 6623 Blast hits to 6621 proteins in 1548 species: Archae - 250; Bacteria - 4438; Metazoa - 370; Fungi - 171; Plants - 170; Viruses - 0; Other Eukaryotes - 1224 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G45630.2

Model type
Protein coding
Short Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Computational Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: NAD or NADH binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, binding, catalytic activity, cofactor binding; INVOLVED IN: metabolic process; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01516.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01520.1

Model type
Protein coding
Short Description
NAC domain containing protein 67
Computational Description
NAC domain containing protein 67 (NAC067); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC with transmembrane motif1 (TAIR:AT4G01540.1); Has 2752 Blast hits to 2745 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2752; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR